Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2354g00008 ATGTGTGGTGGTTTTGTCATCTCTGATTTCATAGAACTTCATATCAAGAATGCTCCAGAATCCACCACCCATCACCTCTTCTCTCAGCTCCACACTTTCAATGCCACCTCTTCTTCCACACTCAACAAAGTGGAGGAGACATGTGAGAAGGTCAAGAATAGCAGAGTAATTGCAGAGAAGGGTGATGCACTAGTACGGAAGAATACTCACAAAGGAATCAGGCGAAGGTCGTGGGGCAAGTGGGCTGTGGAAATAAGGGATCCACGCAAGGGCGTTCGCATGTGGCTTGGCACCTTCGCCATTGCAGAAGAAGCCCCACGCGCCTACGCTGCCGTCGCCGTACGCATCCGTAGAGATAAGGCTAGGCTCAACTTCCTCGAGCATCACCGCTGCCCACCCAACATGAACAACAACCCATGCCTCAGCCCCGAGTTGACTTAA 441 0.5147 MCGGFVISDFIELHIKNAPESTTHHLFSQLHTFNATSSSTLNKVEETCEKVKNSRVIAEKGDALVRKNTHKGIRRRSWGKWAVEIRDPRKGVRMWLGTFAIAEEAPRAYAAVAVRIRRDKARLNFLEHHRCPPNMNNNPCLSPELT 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2354g00008 146 Gene3D AP2/ERF domain 69 127 IPR036955 GO:0003700|GO:0006355
Vium2354g00008 146 PANTHER DNA-BINDING DOMAIN 50 127 IPR044808 GO:0003700|GO:0009873
Vium2354g00008 146 PRINTS Ethylene responsive element binding protein signature 92 108 IPR001471 GO:0003700|GO:0006355
Vium2354g00008 146 PRINTS Ethylene responsive element binding protein signature 70 81 IPR001471 GO:0003700|GO:0006355
Vium2354g00008 146 Pfam AP2 domain 70 116 IPR001471 GO:0003700|GO:0006355
Vium2354g00008 146 SUPERFAMILY DNA-binding domain 69 126 IPR016177 GO:0003677
Vium2354g00008 146 ProSiteProfiles AP2/ERF domain profile. 69 126 IPR001471 GO:0003700|GO:0006355
Vium2354g00008 146 SMART rav1_2 69 132 IPR001471 GO:0003700|GO:0006355
Vium2354g00008 146 CDD AP2 70 125 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2354g00008 Vium-Chr2354 83293 83802 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2354g00008 1 129 AP2-EREBP Transcription Factor Family AT3G16770 48.201 7.65e-32 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vium2354g00008 AP2 5.5e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2354g00008 K09286 - vra:106752604 145.206