Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2354g00003 ATGGAGCAGGAACAACAAAACCTTGAAAGCTTCTTAACATGGGCAGCACAACTTGGAATATCAGACTCATCAGCACCCACCAACCAACCTCAACACTCTCCTTCCTCATGTTTGGGTTCTTCTTTATGTGTCGCTCATTTTCCTCACTCTGGCGGGAGAGGTTTGGGTGCTGTGAGAGACCTTAGGAGAGGGGAAATCGTTCTCAGAGTTCCGAAATCTGCTTTAATGACAAGAGAGAGTGTTATGGAAGATGAAAAGCTCTGTTTTGCTGTCAGTAGACACTCTTGTCTCTCCTCAGCTCAGGTATTGATCGTTTGCTTGTTGTATGAAATGGGTAAAGGGAAGACTTCAAGATGGCATCCTTACCTCATGCATTTGCCACACACATATGACATACTAGCGATGTTTGGTGAATTTGAGAAACGTGCTCTCCAAGTGGATGAAGCTGTGTGGGTCACTGAAAAAGCTATACTAAAGGCCAAATCGGAGTGGAAAGAAGCTCTTGCTTTGATGGAAGATCTCATGTTTAGGCCCCAGTTTTTAACTTTAAAGGCTTGGGTTTGGGCTGCTGCAACGATATCTTCTCGAACATTGCATATACCATGGGATGAAGCCGGATGTTTATGCCCTGTGGGTGACTTGTTTAATTATGATGCACCTGGAGAGGAGTCATCTGACATTGATGGTTTAGAACATTTGCCATCAAACTCTTCCATTCACGATCCAAACTTATTAAATGGAGGCAACAATATAATGGTAGATGCAGAACAATTTGATTCTCATTCTCAAAGATTAACTGATGGTGGGTTTGAGGAAGATGTTAATGCATATTGCTTCTATGCTAGAGCACATTACAAGAAAGGCGATCAGGTTCTATTATGCTATGGAACTTACACAAATTTGGAGCTTCTTGAACACTACGGCTTTCTCCTGCAGGAAAATCCAAATGACAAGGTTTTTATCCCTTTGGAACCAGCTATATATTTTTCCACTTCATGGCCTATGGAATCACTCTATATCCATCATAATGGGAAGCCTTCGTTTGCACTACTTGCTGCATTGCGGTTGTGGGCAACCCCTCAAAGCAAAAGGAAGTCTGTCGGACATCTTGTGTATTCTGGTTCACAGCTGTCAGCAGACAATGAAATTTTCATCACGAAATGGCTGTCCAAAATTTGTGCGACTGTGTTAAAAAATCTGCCGACATCTATTGATGAAGACACCTTGCTCTTGAATGCAATGCACAGTAGCCAAGATTTTTTCACTTTCATGGAGATCACAAAACCTATGTCTTCCAGGGATGAGATCTATACCTTCTTAGATGCACATGATATGAAAGATGCTCATAGTTTCACTGGCGTAATATTATCTAGAAAAGCAAGAAGGTCCATGGATAGGTGGAAATTAGCCGTCCAATGGAGACTGAAGTATAAGAAAGTCCTTTCTGATTGTATCTCTTGTTGCAATGAAATACTAGATTCTTTCATAAAATAA 1494 0.413 MEQEQQNLESFLTWAAQLGISDSSAPTNQPQHSPSSCLGSSLCVAHFPHSGGRGLGAVRDLRRGEIVLRVPKSALMTRESVMEDEKLCFAVSRHSCLSSAQVLIVCLLYEMGKGKTSRWHPYLMHLPHTYDILAMFGEFEKRALQVDEAVWVTEKAILKAKSEWKEALALMEDLMFRPQFLTLKAWVWAAATISSRTLHIPWDEAGCLCPVGDLFNYDAPGEESSDIDGLEHLPSNSSIHDPNLLNGGNNIMVDAEQFDSHSQRLTDGGFEEDVNAYCFYARAHYKKGDQVLLCYGTYTNLELLEHYGFLLQENPNDKVFIPLEPAIYFSTSWPMESLYIHHNGKPSFALLAALRLWATPQSKRKSVGHLVYSGSQLSADNEIFITKWLSKICATVLKNLPTSIDEDTLLLNAMHSSQDFFTFMEITKPMSSRDEIYTFLDAHDMKDAHSFTGVILSRKARRSMDRWKLAVQWRLKYKKVLSDCISCCNEILDSFIK 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2354g00003 497 Pfam SET domain 52 296 IPR001214 GO:0005515
Vium2354g00003 497 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 306 488 IPR036464 -
Vium2354g00003 497 ProSiteProfiles SET domain profile. 40 296 IPR001214 GO:0005515
Vium2354g00003 497 CDD SET_LSMT 41 310 - -
Vium2354g00003 497 Gene3D - 330 495 IPR036464 -
Vium2354g00003 497 Gene3D set domain protein methyltransferase, domain 1 4 310 - -
Vium2354g00003 497 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 7 431 - -
Vium2354g00003 497 SUPERFAMILY SET domain 7 314 IPR046341 -
Vium2354g00003 497 FunFam Protein SET DOMAIN GROUP 40 8 310 - -
Vium2354g00003 497 Pfam Rubisco LSMT substrate-binding 345 481 IPR015353 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2354g00003 Vium-Chr2354 48070 52105 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium2354g00003 SET 1.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2354g00003 - - gmx:100787452 863.218