Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2353g00006 ATGCTGGAGGCTCTTAATCAATCGGCTAAAACGATGAAGAAATTGAAGCAGAAGCGAAATCCATTTCATGACTCCAAAATGACAAGGAAACTGCGCATCATTTGCGATGATCCTGATGCCACCGACTCATCATCGGATGAAGAGGAGCATTTTGGGAACGGTAGGAAGGTGAAGAGAACTATGGTTGAGATTGCTCTTCCACCAGTTCCAGTTAACTCTCTCGTTGCAGCTGAAACTAGCACCGAGAGTTCCAACAATGAGGAACTGAACAAGAAGAGGGTTTTGGCCAAAAATCCCTCTGTGAAGAGACAAACTTGTGGCAAATACAAAGGTGTTCGGATGAGGAAATGGGGCAAATGGGCTGCAGAAATTCGCGATCCTTTCAAGGGTGCGCGTGTCTGGTTGGGCACTTACAACACTGCAGAAGAGGCTTCTCAGGCCTATGAGACCAAAAGGCTTGAATTTGAAGCCATGGCCAAGGCTTTGTCCGATGGGAGGAGCAACAACAACAACAACACTGGCACCAACAACAACAATAACCACGTTGTTGCATCTGTTGTAACTGTGGGAGCCTCAGAAAAGAAGAACTCCAACTACTGTGTTTCTTCTGCTGCAGAATCTGCAACAGACTCCAAGTCTGCTACTATCGACTACTCAGAGAGTAGTATCCTGTCACACACATCTCCATATTCCGTGCTTGAGTTGGATACCTCTGCTTCCAATTTGACTGTGAGTGGTAAGGTTTCAGGCAATGAAGTTGTTGAGACTAAAGGTTTGGAGACTGAAGTTGCTGAGATTGAGACTGAAGGTTTAAAAGCTGAAAGTTTTGAAGCTGAATTTGCTGAGCTAGATATTCCTGATTTGAGTATGCTGAGTGTGCCACACCCATCTGCTGTTGCTTCCAATGCTGCCAATGTTGGTGCTCCATCTCAGTTTGAATTTGATTGGTTTGCATTAGACAGTCTGGAGCATGGATTTGATGAAGAGCTTGGGTTTGATGATGATCTTGCTGCCTTGGAAGACATTCAGATATATGGCTTTGATGACGGTCAGCCTAGTGAGCTTCCTGATTACGATTTTGATGACATTGGTGCTGATGAGTTTGCTGGTTGGATTGAAGAACCCCTCAATATACCTTGCGTATAA 1146 0.4485 MLEALNQSAKTMKKLKQKRNPFHDSKMTRKLRIICDDPDATDSSSDEEEHFGNGRKVKRTMVEIALPPVPVNSLVAAETSTESSNNEELNKKRVLAKNPSVKRQTCGKYKGVRMRKWGKWAAEIRDPFKGARVWLGTYNTAEEASQAYETKRLEFEAMAKALSDGRSNNNNNTGTNNNNNHVVASVVTVGASEKKNSNYCVSSAAESATDSKSATIDYSESSILSHTSPYSVLELDTSASNLTVSGKVSGNEVVETKGLETEVAEIETEGLKAESFEAEFAELDIPDLSMLSVPHPSAVASNAANVGAPSQFEFDWFALDSLEHGFDEELGFDDDLAALEDIQIYGFDDGQPSELPDYDFDDIGADEFAGWIEEPLNIPCV 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2353g00006 381 ProSiteProfiles AP2/ERF domain profile. 108 170 IPR001471 GO:0003700|GO:0006355
Vium2353g00006 381 PRINTS Ethylene responsive element binding protein signature 131 147 IPR001471 GO:0003700|GO:0006355
Vium2353g00006 381 PRINTS Ethylene responsive element binding protein signature 109 120 IPR001471 GO:0003700|GO:0006355
Vium2353g00006 381 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 27 232 - -
Vium2353g00006 381 Gene3D AP2/ERF domain 107 163 IPR036955 GO:0003700|GO:0006355
Vium2353g00006 381 SUPERFAMILY DNA-binding domain 108 155 IPR016177 GO:0003677
Vium2353g00006 381 CDD AP2 108 148 IPR001471 GO:0003700|GO:0006355
Vium2353g00006 381 MobiDBLite consensus disorder prediction 1 30 - -
Vium2353g00006 381 SMART rav1_2 108 176 IPR001471 GO:0003700|GO:0006355
Vium2353g00006 381 Pfam AP2 domain 108 157 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2353g00006 Vium-Chr2353 71952 74516 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2353g00006 11 380 AP2-EREBP Transcription Factor Family AT1G68550 34.037 9.07e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vium2353g00006 AP2 6.7e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2353g00006 - - var:108335041 688.723