Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2353g00002 ATGAAGATTAGTTGTAATGGTTGTCGCATTCTTCGCAAAGGTTGTACCGAGGACTGTGTCATTAGGCCATGTCTTGAATGGATAAACTCCTCCGAGGCACAAGCTAATGCCACCCTTTTCCTTTCTAAGTTCTATGGTCGTGCCGGCTTGCTCAACCTCATCAATGCTGCCCCACAACAACATCGGACTGATGTTTTCAAGTCACTAATGTATGAGGCCTGTGGGAGAATCATAAACCCAACATTTGGATCAGTTGGGTTATTTTGGAGTGGTGAGTGGGCCCAATGTCAAGCTGCTGTTGATGCTGTGCTAGCTGGGTCACAGATCAATGTCATGCCAACATCTCATTCGCAAAGCGACCATGGTTCGAAACTCCTTGACATACGACATGTGTCTAAAGATGCCAACATGGACAAGGTGAGAGGAAAATCTAAGAAGCACAAGGATGTTATGATGCCAATGTCACATGTGGGTTTAGTCAACTCAGCTACATTATGGAATCCAATTTTAAGTCATCATGAGCCAAGACGGTTAGAGGGTGGTAATGGGGAAATAATGAAGGCTGTGTTGGTGAGCCAAGACAAGCCAAGAATAAATGGTGGAGCCAATATTGATTTGGAGCTAACTCTTGGCTAG 636 0.4481 MKISCNGCRILRKGCTEDCVIRPCLEWINSSEAQANATLFLSKFYGRAGLLNLINAAPQQHRTDVFKSLMYEACGRIINPTFGSVGLFWSGEWAQCQAAVDAVLAGSQINVMPTSHSQSDHGSKLLDIRHVSKDANMDKVRGKSKKHKDVMMPMSHVGLVNSATLWNPILSHHEPRRLEGGNGEIMKAVLVSQDKPRINGGANIDLELTLG 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2353g00002 211 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Vium2353g00002 211 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 147 - -
Vium2353g00002 211 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2353g00002 Vium-Chr2353 29520 30522 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2353g00002 1 134 AS2 family AT1G68510 63.768 2.27e-62 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium2353g00002 LOB 1.9e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2353g00002 - - vum:124830139 434.876