Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2353g00001 ATGTCTTCCAACAAGAACATGGGAAAAACTGTCGGCGCAAAAACGGCAAGAGCATGTGATGGCTGCATAAGAAATCGAGCGCGTTGGTACTGTGCGGCCGACGACGCGTTCCTATGCCAAGCTTGTGACTCTTCCGTTCACTCAGCGAACCCATTAGCGCGTAGACACCACCGCGTTCGCTTGAAAATCATTTCGCACATTAACTCCGGCAATGACTTATCTTCTGGAATGAGTAATAGTCGTGTTCCATCGTGGCACAAAGGGTTCACCAAGAAACCCCGAACACCACGTCACGGGAGGCACACTAATAAGGGTGTCAAGAGCCCCTTCAATGTGGTACCGGAAGCGTGTCCCCAAGAAACAATTTGGAATTCACATGAAGAGAGCACAGATCAGCTTCTTTACAGAGTACCCGCAACTCCTTCATCTGAACAAGGGGTATCCATGACCGATGAGAGGAAAGTTGTTTTTTTAGGATGTGAAAGCGCTATTGAGATTGCGGAGTTTAGTGCCGATGTTGAGAGTTTGTTGGGGAAGGGACTAGAGAGTGAGTTTGTGGGAATGGAAGAGTTGGGGCTGGTGGGTGCCAAGGAGGTGGAGGAGCATGTGAAGGTGGAGGAGGAGGCGCTTGAATTGGATAAGAACCAGCAAGTACTCAAAGAAAATTATCAGCTGAAGAAGAAGATACTATTGTTGCAGTTGGATTACGAGGCTGTAATCAGTGCTTGGACGACCCAAAAATCACCATGGACAACTGGTGCTAAACCAAACTTGGGCACTCAGCAGTTTTGGCCTCATTTCATGGGAACATGTGGAGTCGAGTTTTGCCATCTTCGTGGGGAATTGGGTGAATTATCTGGGTGTCATTCAACAATGGGAGACGATGGAAGAGAAGCAAGAGTATTGAGATATAGAGAAAAGCGACGTAAAAGGTTGTTCTCGAAAAAAGTAAGGTATGAGGTTCGAAAGATGAATGCGGAGAAAAGACCCAGAATGAAAGGGAGGTTTGTAAAGAGATCTTGCATAGCGACACCACCCACTGTTCCCTTGTTAAACAGAAAATAA 1065 0.4676 MSSNKNMGKTVGAKTARACDGCIRNRARWYCAADDAFLCQACDSSVHSANPLARRHHRVRLKIISHINSGNDLSSGMSNSRVPSWHKGFTKKPRTPRHGRHTNKGVKSPFNVVPEACPQETIWNSHEESTDQLLYRVPATPSSEQGVSMTDERKVVFLGCESAIEIAEFSADVESLLGKGLESEFVGMEELGLVGAKEVEEHVKVEEEALELDKNQQVLKENYQLKKKILLLQLDYEAVISAWTTQKSPWTTGAKPNLGTQQFWPHFMGTCGVEFCHLRGELGELSGCHSTMGDDGREARVLRYREKRRKRLFSKKVRYEVRKMNAEKRPRMKGRFVKRSCIATPPTVPLLNRK 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2353g00001 354 ProSiteProfiles CCT domain profile. 297 339 IPR010402 GO:0005515
Vium2353g00001 354 Coils Coil 196 216 - -
Vium2353g00001 354 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Vium2353g00001 354 MobiDBLite consensus disorder prediction 88 110 - -
Vium2353g00001 354 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 340 - -
Vium2353g00001 354 MobiDBLite consensus disorder prediction 88 104 - -
Vium2353g00001 354 Pfam B-box zinc finger 17 58 IPR000315 GO:0008270
Vium2353g00001 354 CDD Bbox1_BBX-like 18 61 - -
Vium2353g00001 354 SMART bboxneu5 14 61 IPR000315 GO:0008270
Vium2353g00001 354 Pfam CCT motif 297 339 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2353g00001 Vium-Chr2353 19952 21725 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2353g00001 5 339 C2C2-CO-like Transcription Factor Family AT1G25440 41.748 3.59e-84 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vium2353g00001 CCT 1.3e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2353g00001 - - vun:114173052 550.436