Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2352g00020 ATGTCTTCATCTTCTCGTGTTCTTCCCACTCCCCTAGAAAACAAGTATATGAAGCCCCCAGATTCTTGTCATCTTTCACCTGCCAGTGATCTGGCTGCAAATTCTGTCTCATCAAATTTAATCACAAGTGCTGGGAAGATCATCTCATCACCCTCTGAATATCCTGATGGCACCCCTTTTCCCTATGCTTCACAGCATGATAGGCAAAATGAAGATCTCCCCTTTGTTTCTCAGACATTGGGTGACAATGTGTCTTCCGAAATACACTCAACAACATTCATTTCTCACCCTCATGAAAGCACAGATATTACCTGGGGACCAGATCCCTTTCAGGATATTCTTGGCTTTCCCGAAAATATTTCTGCCCAGCATGATCAGGTGGTAGACAATGCCTGTTACATAAACGATGAGAATGTCAAAAGAACCGATTTTGGGGAGTGGGTTGATCAGTTAATGTCAATTGATGATTCTCTTCACCCAAACTGGAGTCAGCTTCTTGGTGATGACAATGCAGCAGAACCAAAACCAAAGGTTCCTCAGTTGCTGGATATACCATCTGGAGAAGTTAATGGCAATTCAGCAGCAACCACACCACAGACTAAGACTAGAATGCGTTGGACTCCAGAACTTCACGAGGCCTTTGTGGAAGCAGTCAATCAGCTTGGTGGTAGTGAGAAGGCTACTCCAAAGGGTGTGTTGAATCTGATGAAAGTTGATGGCCTTACCATCTATCATGTAAAAAGCCACTTGCAGAAATATAGAACTGCCAGATACAAACCAGAGCCATCAGAAGGAACATCAGAGAAAAAGACGACACCAATAGAAGAAATGAAATCTCTAGACTTAAAAACGAGTAAAGGGATCACTGAAGCATTACGATTGCAGATGGATCTCCAGAAGCGACTTCACGAGCAACTTGAGATACAAAGAAAGTTGCAAATTCAAATCGAAGACCAAGGGAAACGTCTTCAGATGATGTTTGAGAAACAAAGAGAGATGGGTGGCAAGAAGGTTAATGGCTCCTCCGGAGAGGCAGCTGCTGCCACCGCCACCTCCACCACCCCATCAGACACTGTGCTTCCTTCTTCTCCTCCAGTAGAAACCTCAAATGAAGGACATGAGAAAATGATGCATGAAGAGAAGAATGGAAGCACAAAGCAAAAAACAAGTGAAGGTGAAGAAGTGATGAATGAAGATGAAGATGAAATTGCACCAGCTACAAAACGGGTGAAAAGTTCATAA 1242 0.434 MSSSSRVLPTPLENKYMKPPDSCHLSPASDLAANSVSSNLITSAGKIISSPSEYPDGTPFPYASQHDRQNEDLPFVSQTLGDNVSSEIHSTTFISHPHESTDITWGPDPFQDILGFPENISAQHDQVVDNACYINDENVKRTDFGEWVDQLMSIDDSLHPNWSQLLGDDNAAEPKPKVPQLLDIPSGEVNGNSAATTPQTKTRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMKVDGLTIYHVKSHLQKYRTARYKPEPSEGTSEKKTTPIEEMKSLDLKTSKGITEALRLQMDLQKRLHEQLEIQRKLQIQIEDQGKRLQMMFEKQREMGGKKVNGSSGEAAAATATSTTPSDTVLPSSPPVETSNEGHEKMMHEEKNGSTKQKTSEGEEVMNEDEDEIAPATKRVKSS 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2352g00020 413 Gene3D - 200 259 - -
Vium2352g00020 413 FunFam Myb family transcription factor 200 258 - -
Vium2352g00020 413 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 199 258 IPR017930 -
Vium2352g00020 413 SUPERFAMILY Homeodomain-like 199 255 IPR009057 -
Vium2352g00020 413 MobiDBLite consensus disorder prediction 255 278 - -
Vium2352g00020 413 NCBIfam myb-like DNA-binding domain, SHAQKYF class 201 255 IPR006447 GO:0003677
Vium2352g00020 413 MobiDBLite consensus disorder prediction 47 66 - -
Vium2352g00020 413 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 192 386 IPR044848 GO:0003700
Vium2352g00020 413 MobiDBLite consensus disorder prediction 344 369 - -
Vium2352g00020 413 MobiDBLite consensus disorder prediction 330 413 - -
Vium2352g00020 413 MobiDBLite consensus disorder prediction 1 23 - -
Vium2352g00020 413 MobiDBLite consensus disorder prediction 371 393 - -
Vium2352g00020 413 Pfam Myb-like DNA-binding domain 203 254 IPR001005 -
Vium2352g00020 413 Pfam MYB-CC type transfactor, LHEQLE motif 288 332 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2352g00020 Vium-Chr2352 185302 188963 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2352g00020 42 400 G2-like Transcription Factor Family AT3G04450 41.795 2.46e-80 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium2352g00020 Myb_DNA-binding 1.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2352g00020 - - gmx:100803267 596.66