Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2352g00006 ATGCACCAAGAAGAAGAAGCCCCCAAAAAACAACAATACCAAGCGTTGGAAGAAATCGGTCGAGGCAAATTCGCCACCGTCTTCCGCTGCTTCCACCCTTCCTCCAACCAATTCTACGCTCTCAAACTCATCAACAACCGCCTCCTCACCGACGCCACCGACCGTCACTGCCTCGAAGTGGAGGCCAAGGCCATGACCTTCCTCTCTCCCCACCCCAACATTCTCAAAATCATCGACGCCTTCCAAGACGCCCACACCTCCACCATCATTCTCCAGCTCTGCCAGCCTCGCACCCTCTTCGACCGCATCGCCGACGGCCCTCTGCCGGAGTCCCACGCCGCCTCCCTCACCAAACAGCTCCTCGAAGCCCTCACCCACTGCCACGCGCTCGGCCTCGCCCACAGAGACATCAAACCCGAAAACCTCTTGTTCGACGAAGCCAACAACCTTAAACTCTCCGACTTCGGCTCTGCAGAGTGGTTCGGTGAGGGCAGGAGCATGCGCGGCGTGGTGGGCACCCCTTATTACGTGGCGCCTGAAGTGATCATGGGGAGAGAGTACGACGAGAAAGTCGATGTTTGGAGCTGTGGGGTTATTCTTTACACAATGTTGAGTGGCATTCCACCCTTCTATGGCGACTCTGCTGCAGAAATTTTCGAAGCTGTTTTAAGGGCTAATCTTAGGTTTCCTTCCACAATTTTTAGGTCTGTGTCTCTTCAGGCTAAGGATCTTCTTAGGAAGATGATCTGTAGAGATCCCTCTAGACGTATATCTGCACTTCAAGCATTGAGACATCCATGGATTTTTAGTAGTGCTGATCTTTCTTGA 828 0.5326 MHQEEEAPKKQQYQALEEIGRGKFATVFRCFHPSSNQFYALKLINNRLLTDATDRHCLEVEAKAMTFLSPHPNILKIIDAFQDAHTSTIILQLCQPRTLFDRIADGPLPESHAASLTKQLLEALTHCHALGLAHRDIKPENLLFDEANNLKLSDFGSAEWFGEGRSMRGVVGTPYYVAPEVIMGREYDEKVDVWSCGVILYTMLSGIPPFYGDSAAEIFEAVLRANLRFPSTIFRSVSLQAKDLLRKMICRDPSRRISALQALRHPWIFSSADLS 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2352g00006 275 ProSiteProfiles Protein kinase domain profile. 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2352g00006 275 Gene3D Phosphorylase Kinase; domain 1 1 94 - -
Vium2352g00006 275 SMART serkin_6 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2352g00006 275 SUPERFAMILY Protein kinase-like (PK-like) 10 270 IPR011009 -
Vium2352g00006 275 Gene3D Transferase(Phosphotransferase) domain 1 97 274 - -
Vium2352g00006 275 PANTHER SERINE/THREONINE-PROTEIN KINASE 9 268 - -
Vium2352g00006 275 CDD STKc_CAMK 12 267 - -
Vium2352g00006 275 Pfam Protein kinase domain 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2352g00006 275 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Vium2352g00006 275 PIRSF ILK 2 265 - -
Vium2352g00006 275 FunFam Maternal embryonic leucine zipper kinase 4 274 - -
Vium2352g00006 275 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2352g00006 Vium-Chr2352 43934 45054 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2352g00006 13 275 EF-hand Containing Proteins AT1G50700 39.700 2.05e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vium2352g00006 Pkinase 2.4e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2352g00006 - K08794 gmx:547573 411.379