Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2352g00005 ATGGAGCAATCGGTTTTGGATGACATAATCAGTCGTCTCCTCGAAGTTCGTACCCGACCCGGGAAGCAGGTTCAGCTATCGGAGTCCGAGATCCGTCAACTCTGCGTCGTTTCCAGAGACATTTTCTTGCAACAACCTAATTTATTGGAGCTCGAAGCGCCTATTAAGATTTGTGGTGATGTACATGGCCAATATTCTGATCTCTTAAGGCTTTTTGAGTACGGTGGATTACCTCCTGAAGCCAACTACTTGTTTCTGGGGGATTATGTGGATCGAGGGAAACAGAGTTTAGAAACAATTTGCCTTCTCCTTGCTTATAAAATAAAATATCCTGAGAACTTTTTCCTGTTAAGGGGAAACCATGAATGTGCTTCTATAAATCGGATATATGGATTTTATGATGAGTGCAAGAGAAGGTTCAATGTAAGGTTATGGAAGACATTTACAGAGTGCTTCAATTGCCTGCCCGTGGCAGCCCTTGTTGATGAAAAGATTTTATGTATGCACGGAGGACTTTCTCCTGACTTACTTAATTTGGATCAGATTCGAAATATACAGCGGCCCACAGATGTTCCTGATACAGGTTTGCTTTGTGATCTCCTTTGGTCTGACCCAAGCAAAGAAGTTCAAGAATGGGGAATGAATGATAGAGGAGTTTCATATACATTTGGTGCTGATAAGGTCTCAGAGTTTCTTCAGAAACATGATCTTGATCTTGTTTGTCGTGCACATCAGGTTGTGGAAGATGGATACGAGTTCTTTGCTAATCGACAGCTTGTAACAATATTTTCAGCACCTAATTATTGTGGGGAGTTTGACAATGCCGGTGCTATGATGAGTGTTGACGAGACACTAATGTGCTCTTTCCAAATATTAAAGCCAGCTGATAAAAAAACAAAGCACAATTTTGGAAGTACTACCACTGCTAAGCCTGGAAACTCCCCAGCAGGTGTAAAGTCCTTCCTGGGAGCGAAAGTATGA 981 0.419 MEQSVLDDIISRLLEVRTRPGKQVQLSESEIRQLCVVSRDIFLQQPNLLELEAPIKICGDVHGQYSDLLRLFEYGGLPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKTFTECFNCLPVAALVDEKILCMHGGLSPDLLNLDQIRNIQRPTDVPDTGLLCDLLWSDPSKEVQEWGMNDRGVSYTFGADKVSEFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPADKKTKHNFGSTTTAKPGNSPAGVKSFLGAKV 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2352g00005 326 SMART pp2a_7 26 296 IPR006186 GO:0016787
Vium2352g00005 326 SUPERFAMILY Metallo-dependent phosphatases 17 299 IPR029052 -
Vium2352g00005 326 Gene3D - 1 305 IPR029052 -
Vium2352g00005 326 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Vium2352g00005 326 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Vium2352g00005 326 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
Vium2352g00005 326 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Vium2352g00005 326 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Vium2352g00005 326 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Vium2352g00005 326 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Vium2352g00005 326 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Vium2352g00005 326 FunFam Serine/threonine-protein phosphatase 52 305 - -
Vium2352g00005 326 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
Vium2352g00005 326 CDD MPP_PP1_PPKL 5 294 - -
Vium2352g00005 326 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 9 301 - -
Vium2352g00005 326 Pfam Calcineurin-like phosphoesterase 54 246 IPR004843 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2352g00005 Vium-Chr2352 33049 37766 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2352g00005 55 242 Calmodulin-binding Proteins AT5G63870 31.390 6.42e-28 108