Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2352g00003 ATGGAGCAATCGGTTTTGGATGACATAATCAGTCGTCTCCTCGAAGTTCGTACCCGACCCGGGAAGCAGGTTCAGCTATCGGAGTCCGAGATCCGTCAACTCTGCGTCGTTTCCAGAGACATTTTCTTGCAACAACCTAATTTATTGGAGCTCGAAGCGCCTATTAAGATTTGTGGTGATGTACATGGCCAATATTCTGATCTCTTAAGGCTTTTTGAGTACGGTGGATTACCTCCTGAAGCCAACTACTTGTTTCTGGGGGATTATGTGGATCGAGGGAAACAGAGTTTAGAAACAATTTGCCTTCTCCTTGCTTATAAAATAAAATATCCTGAGAACTTTTTCCTGTTAAGGGGAAACCATGAATGTGCTTCTATAAATCGGATATATGGATTTTATGATGAGTGCAAGAGAAGGTTCAATGTAAGGTTATGGAAGACATTTACAGAGTGCTTCAATTGCCTGCCCGTGGCAGCCCTTGTTGATGAAAAGATTTTATGTATGCACGGAGGACTTTCTCCTGACTTACTTAATTTGGATCAGATTCGAAATATACAGCGGCCCACAGATGTTCCTGATACAGGTTTGCTTTGTGATCTCCTTTGGTCTGACCCAAGCAAAGAAGTTCAAGAATGGGGAATGAATGATAGAGGAGTTTCATATACATTTGGTGCTGATAAGGTCTCAGAGTTTCTTCAGAAACATGATCTTGATCTTGTTTGTCGTGCACATCAGGTTGTGGAAGATGGATACGAGTTCTTTGCTAATCGACAGCTTGTAACAATATTTTCAGCACCTAATTATTGTGGGGAGTTTGACAATGCCGGTGCTATGATGAGTGTTGACGAGACACTAATGTGCTCTTTCCAAATATTAAAGCCAGCTGATAAAAAAACAAAGCACAATTTTGGAAGTACTACCACTGCTAAGCCTGGAAACTCCCCAGCAGGTGTAAAGGTAGGAAGTTTATAG 972 0.4156 MEQSVLDDIISRLLEVRTRPGKQVQLSESEIRQLCVVSRDIFLQQPNLLELEAPIKICGDVHGQYSDLLRLFEYGGLPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKTFTECFNCLPVAALVDEKILCMHGGLSPDLLNLDQIRNIQRPTDVPDTGLLCDLLWSDPSKEVQEWGMNDRGVSYTFGADKVSEFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPADKKTKHNFGSTTTAKPGNSPAGVKVGSL 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2352g00003 323 SMART pp2a_7 26 296 IPR006186 GO:0016787
Vium2352g00003 323 SUPERFAMILY Metallo-dependent phosphatases 17 299 IPR029052 -
Vium2352g00003 323 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Vium2352g00003 323 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
Vium2352g00003 323 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Vium2352g00003 323 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Vium2352g00003 323 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Vium2352g00003 323 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Vium2352g00003 323 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Vium2352g00003 323 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Vium2352g00003 323 CDD MPP_PP1_PPKL 5 294 - -
Vium2352g00003 323 MobiDBLite consensus disorder prediction 301 323 - -
Vium2352g00003 323 FunFam Serine/threonine-protein phosphatase 52 305 - -
Vium2352g00003 323 Pfam Calcineurin-like phosphoesterase 54 246 IPR004843 GO:0016787
Vium2352g00003 323 Gene3D - 1 305 IPR029052 -
Vium2352g00003 323 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 9 301 - -
Vium2352g00003 323 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2352g00003 Vium-Chr2352 33046 37766 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2352g00003 55 242 Calmodulin-binding Proteins AT5G63870 31.390 7.97e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2352g00003 K06269 - gmx:100816262 636.721