Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2352g00002 ATGTCTGCCCATCACCCTCATTTCCTTAACTTGGGTCCCATTAATCACCACACCATATCTTGCAAGTGGCTAATGCCAATGCACCATTCCTATATAACTAACCACATTCCTCACACCATTTCCGTCAATACACAAACAAATATGACTTCCTCATTCTGTTCCCTTCCTTTCAACGAAAACGACTCTCAAGAAATGCTCCTTTACCAACTCCTCGCTCAGCCTGCTGCACCTTCCTCCCACTCAATAACATCATCGTTATCTTCGTTGTCTCATGGTTCAAGTGTCGCCGAAGCAGAGGTTTCGGTTTCGTACAGAGGGGTTCGGAGGAGGCCGTGGGGGAAGTACGCGGCGGAGATAAGGGACTCCACCAGGAACGGAGTCAGGGTTTGGTTGGGAACCTTCGACACTGCCGAGGCTGCTGCTCTGGCTTACGACCAGGCTGCGTTGGCCATGCGAGGCTCCATGGCGGTGCTCAACTTCCCGGCTGAGATGGTTTGGCAATCGCTTCGGAAAATGGAGTATGGTTTTGACCAAGGGTGTTCCCCTGTTCTGGAGTTGAAAAAGAGACACTCCATTAATAGAAAATGTGAGAGGAACAAGCTCAAGAATAAGGTGCAGGAAGAAGAAGAAGAAAGGGTTTCCCAAAATGTGATGGTGTTGGAGGACTTAGGAGCAGAGTATTTGGAACATCTTCTTAGTGTCTCGCAGGATATGATATGA 720 0.4861 MSAHHPHFLNLGPINHHTISCKWLMPMHHSYITNHIPHTISVNTQTNMTSSFCSLPFNENDSQEMLLYQLLAQPAAPSSHSITSSLSSLSHGSSVAEAEVSVSYRGVRRRPWGKYAAEIRDSTRNGVRVWLGTFDTAEAAALAYDQAALAMRGSMAVLNFPAEMVWQSLRKMEYGFDQGCSPVLELKKRHSINRKCERNKLKNKVQEEEEERVSQNVMVLEDLGAEYLEHLLSVSQDMI 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2352g00002 239 Coils Coil 191 218 - -
Vium2352g00002 239 Gene3D AP2/ERF domain 103 163 IPR036955 GO:0003700|GO:0006355
Vium2352g00002 239 SMART rav1_2 103 167 IPR001471 GO:0003700|GO:0006355
Vium2352g00002 239 ProSiteProfiles AP2/ERF domain profile. 103 161 IPR001471 GO:0003700|GO:0006355
Vium2352g00002 239 CDD AP2 104 162 IPR001471 GO:0003700|GO:0006355
Vium2352g00002 239 PRINTS Ethylene responsive element binding protein signature 127 143 IPR001471 GO:0003700|GO:0006355
Vium2352g00002 239 PRINTS Ethylene responsive element binding protein signature 104 115 IPR001471 GO:0003700|GO:0006355
Vium2352g00002 239 PANTHER DNA-BINDING DOMAIN 81 233 IPR044808 GO:0003700|GO:0009873
Vium2352g00002 239 FunFam Ethylene-responsive transcription factor 2 102 163 - -
Vium2352g00002 239 Pfam AP2 domain 104 153 IPR001471 GO:0003700|GO:0006355
Vium2352g00002 239 SUPERFAMILY DNA-binding domain 104 163 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2352g00002 Vium-Chr2352 31005 31844 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2352g00002 55 237 AP2-EREBP Transcription Factor Family AT3G23240 53.552 2.43e-63 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium2352g00002 AP2 2.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2352g00002 K14516 - gmx:100787732 219.164