Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2352g00001 ATGCAAAACCTTCGCACCTCATCATCTTCCTCCATACAAAATCCAGAACCAAGCTCCTCCACAAACGCCGTCGTATCAGAAACATCTCTGAAACAAAAGAAAGACGATCCAACATCAGAAAAAGCTACGAACATGTCTACCATGGGTAAGCCCAGGGGTCGCCCTCTAGGCTCCAAGAACAAGCCCAAACCAACATCGGTCAGGAGCAGAGACACCCATAATCTTATCGAAAGTCACATGATCGAGATAGCAAGTGGAACAGACATCATCGATAACTTGGTCCAGTTTGCTCGAAGGAAAAAACGAGGTTTTTGTGTTCTGAGCGCCATTGGGAGCATTAGGAATGTGACTCTCCAGCAGTCGTTGATCCCTGACACCATCATGACACTGGAAGGTCAGTTGCAGATACTATCGTTGAAAGGTTCGTTTTTGCCCGGAGCAACACCGCCTACGTTGTCGGTTTATCTGGCGGGTGCTAAGGGACAAGTTGTCGGAGGCAAAGTGGTAGGTCCGTTGGTGGCATCAGGAAGAGTTTTCATTGTTTTGGCTGCGTTTTCTAATGCTGCATTTGACAGATTACCCTTTGTGCTTGAGGGTGGCGAAGAGGCTTCATCCTCTAATCATCAACATCATAACAATTTTTGTCCTTCAAATCTGCCATAG 663 0.4676 MQNLRTSSSSSIQNPEPSSSTNAVVSETSLKQKKDDPTSEKATNMSTMGKPRGRPLGSKNKPKPTSVRSRDTHNLIESHMIEIASGTDIIDNLVQFARRKKRGFCVLSAIGSIRNVTLQQSLIPDTIMTLEGQLQILSLKGSFLPGATPPTLSVYLAGAKGQVVGGKVVGPLVASGRVFIVLAAFSNAAFDRLPFVLEGGEEASSSNHQHHNNFCPSNLP 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2352g00001 220 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 12 209 IPR014476 GO:0003680
Vium2352g00001 220 PIRSF ESCAROLA 1 218 IPR014476 GO:0003680
Vium2352g00001 220 MobiDBLite consensus disorder prediction 1 28 - -
Vium2352g00001 220 Gene3D - 77 202 - -
Vium2352g00001 220 MobiDBLite consensus disorder prediction 1 73 - -
Vium2352g00001 220 Pfam Plants and Prokaryotes Conserved (PCC) domain 78 187 IPR005175 -
Vium2352g00001 220 CDD DUF296 79 159 IPR005175 -
Vium2352g00001 220 ProSiteProfiles PPC domain profile profile. 73 206 IPR005175 -
Vium2352g00001 220 SUPERFAMILY AF0104/ALDC/Ptd012-like 74 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2352g00001 Vium-Chr2352 1878 2540 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2352g00001 50 220 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 50.000 1.42e-45 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2352g00001 - - var:108344319 413.305