Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2350g00002 ATGCAGAGGAAGATCTACGTGACTAACGACGATGCAGAACTCGATCCGCAGAAGCTTTCGACGTTCTTTCCACGGTTCGGGGAAATTGAGGAGGGGCCTTTGGGGCTGGATAAGTCAGTTTTTTCGCTCCCGATTTCTCCAATTCCAATGGAAAGAGGCAGAGGCAGTCACGGTGGCCGTAGCAGTTACCGCGGCCGTGGCAGTTACCACGGTCGTGACAGTTACCACGGTCGTGACAGTTACCACGGTCGTGACAGTTACCATGGTCGTGACAGTGGCAGTTATGGTATCGGTGAGGGCAATGCTGGGCACTACACTTCTGATGGTCGATACGGCAATACTGGTCGTAGCAGTTACGGCGGACGTGACAGTTACGGTGGCCGTAGAGGAAGGTTCTACCAACGTCCCCAGTTAAGTGGTGGCAATGAACACAGGTCTCCTTCCCAACCACAGCCAAAAGAACAGTGGCAACGGAAGTTAAATCCTTCTTCTTCTTCCCGTGGGGAATCTTCAGAACCACATGCTTCTCAACCTCGACCTGAAATTGAAACTGAAACTGGAATTGAAACTGACAAACTGACAATTCAAAATCCAGACGTCGGATCTTTGAGGATATCAGAGGAAAAAGTAGAGAGCATCAGACCAATGCGTAGGCCTGACAAAGGGGGAAAAATGGCAGCTAAGAGAAACACCCTTGAGGTGAATTATTTCCTTGTTCAGTTTGATGAAAAGAGAGTAATATTCCACTACAATGTGGATGTGAAGGCCAAGGCTCCATCCATGAACAACCGGCCTCAGAAGATTTCCAAGTTTCTTCTGTCGTCGATTCGGGATAAGCTGTTTTCCGATCAGGCGTTCCCGACTTCGGCGTACGACGGCGACAAGAGCATATTCAGCTCGGAGCGCTTGAAGGAAGGAACCTTCGATGTGGAGGTGGTGAAAGGTGGGGAAGCAAGAATGCTTTGGTATTCGGTCACTCTTACACTTGTGAAGGACCTTGAACTCCGCAAGTTGAGAGATTACTTGAGTGGAAAGGTTCTTGGAACTCCTGCAGATGTTTTACAGGGCTTGAATTTGGTGGCGAAGGAGAATCCCAGTAAGCAGTGTGATACGGTTGGGTGCTGCTTCTTCCCCAAGGATCATCCCATAAGTCCGGAAGACTCTAAAGGGATAATTGCAACTGGAGGGTTTCAGCAGAGTCTTAAAACCAGTTCTCAGGGCTTGTCCTTGTGCGTCGACTTTTCCGTTCTGTCGTATTTTGGGGAGGAGAAACCGGTGTTGAAGTTTCTGCACGAACAGATTGAGAATTTCGATTTGAGGATGTTTCCCAAGTTCAAGAAAAAAGTTGAGGATTTACTTGTCGGGTTGAAAGTTAATGTAACCCACCGGAAGACGAAGCAGAAATACACTATCACAAAGTTGACACCCATGGTTACGAGCAAGATCAGATTCCCTGTTTTGGACAGTGAGGGGCGGAATCCAGCAGGGGAATGTAGTCTGATTGATTACTTTTGCAGGAAGCATAAGGTGGAGATTCAACACACGGAAATTCCTGCCTTGGATTTTGGAGGCAACAAGATGAATTATGTTCCAATGGAGTTGTGCGTCTTGATCAAGGATCAAAGATGCCCCAAAGAGAACTTACTGAATACAGATGCTGGCAATGTGTTGAGAAGAATGTCACTGGCTACTGCAGGAGAAAGGCGAAGAAAAATATGCACTATAGTGGAATCAGAGGAAGGACCGTGTGGAGGTGGTGTTATGGAGAGTTTTGGCATGCGTGTGGACACTTCCATGACAAAAGTGACAGGACGCGTTATTCAGCCCCCTGAATTGAAGATAGCTAATCGAAAGGGTGGGATTATTAGTATGACACTGGAAGTGGGGAAACCTCAGTGGAGTCTGAAGGGAGGTTCAATGGTGGAAGGCAAGCCGTTAAAGTGTTGGGGCATTATTTATTTTTCTGATTCCAAGTGCCAATTTAAAAGCGAACAGTTCATTAACAATCTTCGTAAGAAGTGCGGATTACTCGGCATTAGAATGGAGAAGCCAGCTTGTTCTCAAGAATTTCCTATGTCGACTCTTCGCAAATACGAGTCGCTGTGTGAGTTACTTCAAAACATTGATCACCAGGTTCAAAAGGAACGTGAACAACGGCTGCAGATTCTTCTTTGTGTGATGGCCGATAAAGATTCAGGTTACAAGAGCCTAAAGTTGATCGCCGAGACCAAGGTTGGGGTGGTGACACAATGCTGCTTACGTTGTCACGCTAGTGATTCGAAGGATCACTTCCTTACAAATCTTGCCCTCAAGATGAATGCCAAAATTGGAGGAAGTAATGTAGAGCTCATGAATAAGCTACCAAACTTTGACGGCGAAGGTCATGTTATGTTCATAGGAGCTGATGTTAATCATCCACCTTCCAGGGACACCAACAGTCCATCAATTGCTGCTGTAGTCGCCACTGTTAATTGGCCTGCTGCAAATCGCTATGCTGCACGTGTTTGTGCTCAAGGTCACCGGGTTGAAAAAATTTTGAATTTTGGAAGAAGTTGCCTTGAACTAGTTTCTTATTACAATAAGCTGAACAACGTGTGGCCAGAAAAAATTGTTATCTTTCGAGATGGCGTGAGCGAAAGTCAATTTAACATGGTTCTGACGGAAGAGCTGCAAGATTTGAAATCAGTGTTTGGTGACTCAAATCACTCGCCAACCATCACTCTTATTGTTGCACAAAAGCGACATCAAACTCGATTTTTTGTGAAGGGTAAAAGTTTCAATGTGCTACCCGGAACAGTTATAGACACAGAGGTGGTACATCCTTATGAATTTGACTTCTACCTTTTTAGTCACAAAGGGATATCGGGTACAAGCAAGCCCACTCATTATCATGTGTTATGGGATGAACACAAATTTACATCTGATGATTTGCAGAAACTTATATACGAAATGTGCTTTACCTTTGCAAAGTGCACTGGACCAGTATCTTTGGTTCCTCCAGTGTACTATGCTGATCTAGCTGCATACAGAGGCCGGGTATACTATGAAGCAATGAATGAAGTCAAATCTGATCGCTCTGCCACTACTGGATCTTCTTCCTCAGTTTCTGCTTTAAATGATGAAGGCTGTTACAAGTTGCACCCTGACGTCGAAAACCTTATGTTCTTCATTTGA 3174 0.4537 MQRKIYVTNDDAELDPQKLSTFFPRFGEIEEGPLGLDKSVFSLPISPIPMERGRGSHGGRSSYRGRGSYHGRDSYHGRDSYHGRDSYHGRDSGSYGIGEGNAGHYTSDGRYGNTGRSSYGGRDSYGGRRGRFYQRPQLSGGNEHRSPSQPQPKEQWQRKLNPSSSSRGESSEPHASQPRPEIETETGIETDKLTIQNPDVGSLRISEEKVESIRPMRRPDKGGKMAAKRNTLEVNYFLVQFDEKRVIFHYNVDVKAKAPSMNNRPQKISKFLLSSIRDKLFSDQAFPTSAYDGDKSIFSSERLKEGTFDVEVVKGGEARMLWYSVTLTLVKDLELRKLRDYLSGKVLGTPADVLQGLNLVAKENPSKQCDTVGCCFFPKDHPISPEDSKGIIATGGFQQSLKTSSQGLSLCVDFSVLSYFGEEKPVLKFLHEQIENFDLRMFPKFKKKVEDLLVGLKVNVTHRKTKQKYTITKLTPMVTSKIRFPVLDSEGRNPAGECSLIDYFCRKHKVEIQHTEIPALDFGGNKMNYVPMELCVLIKDQRCPKENLLNTDAGNVLRRMSLATAGERRRKICTIVESEEGPCGGGVMESFGMRVDTSMTKVTGRVIQPPELKIANRKGGIISMTLEVGKPQWSLKGGSMVEGKPLKCWGIIYFSDSKCQFKSEQFINNLRKKCGLLGIRMEKPACSQEFPMSTLRKYESLCELLQNIDHQVQKEREQRLQILLCVMADKDSGYKSLKLIAETKVGVVTQCCLRCHASDSKDHFLTNLALKMNAKIGGSNVELMNKLPNFDGEGHVMFIGADVNHPPSRDTNSPSIAAVVATVNWPAANRYAARVCAQGHRVEKILNFGRSCLELVSYYNKLNNVWPEKIVIFRDGVSESQFNMVLTEELQDLKSVFGDSNHSPTITLIVAQKRHQTRFFVKGKSFNVLPGTVIDTEVVHPYEFDFYLFSHKGISGTSKPTHYHVLWDEHKFTSDDLQKLIYEMCFTFAKCTGPVSLVPPVYYADLAAYRGRVYYEAMNEVKSDRSATTGSSSSVSALNDEGCYKLHPDVENLMFFI 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2350g00002 1057 CDD Piwi_ago-like 587 1015 IPR045246 -
Vium2350g00002 1057 ProSiteProfiles Piwi domain profile. 722 1016 IPR003165 GO:0003676
Vium2350g00002 1057 MobiDBLite consensus disorder prediction 174 188 - -
Vium2350g00002 1057 MobiDBLite consensus disorder prediction 139 173 - -
Vium2350g00002 1057 Pfam Piwi domain 723 1015 IPR003165 GO:0003676
Vium2350g00002 1057 MobiDBLite consensus disorder prediction 47 200 - -
Vium2350g00002 1057 ProSiteProfiles PAZ domain profile. 424 539 IPR003100 GO:0005515
Vium2350g00002 1057 CDD PAZ_argonaute_like 425 538 - -
Vium2350g00002 1057 Pfam PAZ domain 432 548 IPR003100 GO:0005515
Vium2350g00002 1057 SMART Piwi_a_2 722 1016 IPR003165 GO:0003676
Vium2350g00002 1057 MobiDBLite consensus disorder prediction 66 89 - -
Vium2350g00002 1057 Coils Coil 698 718 - -
Vium2350g00002 1057 Gene3D - 792 1057 IPR036397 GO:0003676
Vium2350g00002 1057 Gene3D paz domain 418 544 - -
Vium2350g00002 1057 Gene3D - 606 784 - -
Vium2350g00002 1057 SMART PAZ_2_a_3 424 556 IPR003100 GO:0005515
Vium2350g00002 1057 Pfam N-terminal domain of argonaute 231 360 IPR032474 -
Vium2350g00002 1057 Pfam Argonaute linker 1 domain 372 415 IPR014811 -
Vium2350g00002 1057 SUPERFAMILY Ribonuclease H-like 706 1017 IPR012337 -
Vium2350g00002 1057 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 228 1017 - -
Vium2350g00002 1057 SUPERFAMILY PAZ domain 419 576 IPR036085 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2350g00002 Vium-Chr2350 6670 11776 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2350g00002 215 1031 Eukaryotic Initiation Factors Gene Family AT1G48410 34.104 6.19e-137 438
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2350g00002 K11593 - gmx:100805250 1143.26