Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2350g00001 ATGGAAAGAGGCAGAGGCAGTCACGGTGGCCGTAGCAGTTACCGCGGCCGTGGCAGTTACCACGGTCGTGACAGTTACCACGGTCGTGACAGTTACCACGGTCGTGACAGTGGCACTTACCACGGCCGTGACAGTGGCAGTTATGGTATCGGTGAGGGCAATGCTGGGCACTACACTTCTGATGGTCGATACGGCAATACTGGTCGTAGCAGTTACGGCGGACGTGACAGTTACGGTGGCCGTAGAGGAAGGTTCTACCAACGTCCCCAGTTAAGTGGTGGCAACGAACACAGGTCTCCTTCCCAACCACAGCCAAAAGAACAGTGGCAACGGAAGTTAAATCCTTCTTCTTCTTCCCGTGGGGAATCTTCAGAACCACATGCTTCTCAACCTCGACCTGAAATTGAAACTGAAACTGGAATTGAAACTGACAAACTGACAATTCAAAATCCAGACGTCGGATCTTTGAGGATATCAGAGGAAAAAGTAGAGAGCATCAGACCAATGCGTAGGCCTGACAAAGGGGGAAAAATGGCAGCTAAGAGAAACACCCTTGAGGTGAATTATTTCCTTGTTCAGTTTGATGAAAAGAGAGTAATATTCCACTACAATGTGGATGTGAAGGCCAAGGCTCCATCCATGAACAACCGGCCTCAGAAGATTTCCAAGTTTCTTCTGTCGTCGATTCGGGATAAGCTGTTTTCCGATCAGGCGTTCCCGACTTCGGCGTACGACGGCGACAAGAGCATATTCAGCTCGGAGCGCTTGAAGGAAGGAACCTTCGATGTGGAGGTGGTGAAAGGTGGGGAAGCAAGAATGCTTTGGTATTCGGTCACTCTTACACTTGTGAAGGACCTTGAACTCCGCAAGTTGAGAGATTACTTGAGTGGAAAGGTTCTTGGAACTCCTGCAGATGTTTTACAGGGCTTGAATTTGGTGGCGAAGGAGAATCCCAGTAAGCAGTGTGATACGGTTGGGTGCTGCTTCTTCCCCAAGGATCATCCCATAAGTCCGGAAGACTCTAAAGGGATAATTGCAACTGGAGGGTTTCAGCAGAGTCTTAAAACCAGTTCTCAGGGCTTGTCCTTGTGCGTCGACTTTTCCGTTCTGTCGTATTTTGGGGAGGAGAAACCGGTGTTGAAGTTTCTGCACGAACAGATTGAGAATTTCGATTTGAGGATGTTTCCCAAGTTCAAGAAAAAAGTTGAGGATTTACTTGTCGGGTTGAAAGTTAATGTAACCCACCGGAAGACGAAGCAGAAATACACTATCACAAAGTTGACACCCATGGTTACGAGCAAGATCAGATTCCCTGTTTTGGACAGTGAGGGGCGGAATCCAGCAGGGGAATGTAGTCTGATTGATTACTTTTGCAGGAAGCATAAGGTGGAGATTCAACACACGGAAATTCCTGCCTTGGATTTTGGAGGCAACAAGATGAATTATGTTCCAATGGAGTTGTGCGTCTTGATCAAGGATCAAAGATGCCCCAAAGAGAACTTACTGAATACAGATGCTGGCAATGTGTTGAGAAGAATGTCACTGGCTACTGCAGGAGAAAGGCGAAGAAAAATATGCACTATAGTGGAATCAGAGGAAGGACCGTGTGGGTAA 1614 0.4765 MERGRGSHGGRSSYRGRGSYHGRDSYHGRDSYHGRDSGTYHGRDSGSYGIGEGNAGHYTSDGRYGNTGRSSYGGRDSYGGRRGRFYQRPQLSGGNEHRSPSQPQPKEQWQRKLNPSSSSRGESSEPHASQPRPEIETETGIETDKLTIQNPDVGSLRISEEKVESIRPMRRPDKGGKMAAKRNTLEVNYFLVQFDEKRVIFHYNVDVKAKAPSMNNRPQKISKFLLSSIRDKLFSDQAFPTSAYDGDKSIFSSERLKEGTFDVEVVKGGEARMLWYSVTLTLVKDLELRKLRDYLSGKVLGTPADVLQGLNLVAKENPSKQCDTVGCCFFPKDHPISPEDSKGIIATGGFQQSLKTSSQGLSLCVDFSVLSYFGEEKPVLKFLHEQIENFDLRMFPKFKKKVEDLLVGLKVNVTHRKTKQKYTITKLTPMVTSKIRFPVLDSEGRNPAGECSLIDYFCRKHKVEIQHTEIPALDFGGNKMNYVPMELCVLIKDQRCPKENLLNTDAGNVLRRMSLATAGERRRKICTIVESEEGPCG 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2350g00001 537 Pfam PAZ domain 385 501 IPR003100 GO:0005515
Vium2350g00001 537 SUPERFAMILY PAZ domain 372 530 IPR036085 GO:0005515
Vium2350g00001 537 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 181 531 - -
Vium2350g00001 537 SMART PAZ_2_a_3 377 509 IPR003100 GO:0005515
Vium2350g00001 537 MobiDBLite consensus disorder prediction 17 40 - -
Vium2350g00001 537 MobiDBLite consensus disorder prediction 1 149 - -
Vium2350g00001 537 MobiDBLite consensus disorder prediction 92 126 - -
Vium2350g00001 537 CDD PAZ_argonaute_like 378 491 - -
Vium2350g00001 537 MobiDBLite consensus disorder prediction 127 141 - -
Vium2350g00001 537 ProSiteProfiles PAZ domain profile. 377 492 IPR003100 GO:0005515
Vium2350g00001 537 Pfam Argonaute linker 1 domain 325 368 IPR014811 -
Vium2350g00001 537 Gene3D paz domain 371 497 - -
Vium2350g00001 537 Pfam N-terminal domain of argonaute 184 313 IPR032474 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2350g00001 Vium-Chr2350 766 2645 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2350g00001 168 530 Eukaryotic Initiation Factors Gene Family AT1G48410 31.217 5.75e-36 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2350g00001 K11593 - gmx:100805250 467.233