Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium234g00033 ATGTCGAATCAGGTGGTGAAAGTGCGGAGGAACACGATTGTAGCATGCATGACTTGCCCACTCTGCAACAAGTTGTTCAGAGAAGCCACAACCATATCCGAATGTCTTCACACGTTTTGCAGGAAGTGCATTTATGATAAAATTATGGATGAGGAATTGGAAAGTTGTCCAATATGCGGCATTGATTTGGGTTGTGTTCCACTCGAGAAACTGAGGCCAGACCACAGTTTGCAAGATGTGAGGGCCAAAGTTTTCCCCTTGAAGGGAAGAAAGGTGAAGGCACCTGAAATTGTGACCTCAATACCATTACCAGCTAGGAGAAAGGAGAGATCTCTTTCGTCTTTGGTGGTGAACACTCCAAGGGTATCTACACAGGCAACAATGACAGGAAGAAGAACAAAACCTTCAAGAAAGGCTAGTGGTCTGCGGTCCACTAGTTTTTCCTTTGAAAAGCCCATTAAAAAAGAGGAAGATTTACTGGAAGATCATCTTGAGAGTTCAAGCTCACCTGAAAATTCAAATAAGTTTGCTCAGAATTCCGGACAGAGTATGTCCCCTTGTGAGGGTAGTCAATCTGCACCCAATAAAGGATCAGAGAATGGTGGCGAAGCATGGGATGCAAAATTGGATCTCTGGAAGCCTTTGAATTGTTTAGTAGAGGTGGCAAGTAGGAGTAAATCTTTCAAGTCTCATGTGCAAGGGTCTGATGCTAAATTAGAAATCACTCAAGTAAGTGAGAGTGACTCTCAGATGCACAAAACTAAAAATAAGGAAAATAAACGCAAGGCAAAAGTTGAGGATGAAAAGATTAGCCCTTATCCTGCCTCTTCAGATACAGCAAAACCCAATAAATTGCGCAGAATGCGCAAGAAGAAGGAGCCTGCTTCTGGAGAATCAAGCATATCACCCCAAGCTGTGCTTGATTCTGCCAGCAGTAATAGACTCTCTAGGACTGGTCCAATCTGGTTCTCCTTGGTAGCTTCAGAAAACCAGGGAGGAGATGCACCGTTGCCACAAATTCCTGCAAGTTATGTGAGAATCAAGGATGGTAGCGTACCAGTCTCATTCATCCAAAAATACCTAATGAAGAAACTGGACTTGACTAGTGAAACAGAGGTTGAGATTAAATGTATGGGACAATCAGTGCTACCTACATTGCGTCTATATAATTTGGTTGAGTTGTGGTTGGATACAGCATCGACCTCACAGAGAACTCCAGCAACTATCGGTTCCTCAGCAAAGGATTTTGTCATGGTATTGGCTTATGCTCGGAAGGTTCCACACCCATGA 1290 0.4341 MSNQVVKVRRNTIVACMTCPLCNKLFREATTISECLHTFCRKCIYDKIMDEELESCPICGIDLGCVPLEKLRPDHSLQDVRAKVFPLKGRKVKAPEIVTSIPLPARRKERSLSSLVVNTPRVSTQATMTGRRTKPSRKASGLRSTSFSFEKPIKKEEDLLEDHLESSSSPENSNKFAQNSGQSMSPCEGSQSAPNKGSENGGEAWDAKLDLWKPLNCLVEVASRSKSFKSHVQGSDAKLEITQVSESDSQMHKTKNKENKRKAKVEDEKISPYPASSDTAKPNKLRRMRKKKEPASGESSISPQAVLDSASSNRLSRTGPIWFSLVASENQGGDAPLPQIPASYVRIKDGSVPVSFIQKYLMKKLDLTSETEVEIKCMGQSVLPTLRLYNLVELWLDTASTSQRTPATIGSSAKDFVMVLAYARKVPHP 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium234g00033 429 MobiDBLite consensus disorder prediction 250 271 - -
Vium234g00033 429 MobiDBLite consensus disorder prediction 241 311 - -
Vium234g00033 429 SMART ring_2 19 59 IPR001841 -
Vium234g00033 429 ProSiteProfiles Zinc finger RING-type profile. 19 59 IPR001841 -
Vium234g00033 429 MobiDBLite consensus disorder prediction 160 202 - -
Vium234g00033 429 SUPERFAMILY RING/U-box 13 83 - -
Vium234g00033 429 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Vium234g00033 429 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Vium234g00033 429 MobiDBLite consensus disorder prediction 112 147 - -
Vium234g00033 429 MobiDBLite consensus disorder prediction 297 311 - -
Vium234g00033 429 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 1 425 IPR044807 GO:0004842
Vium234g00033 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 112 IPR013083 -
Vium234g00033 429 MobiDBLite consensus disorder prediction 166 198 - -
Vium234g00033 429 CDD RING-HC_PCGF 17 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium234g00033 Vium-Chr234 392035 398947 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium234g00033 3 348 C3H Transcription Factor Family AT2G30580 54.467 2.84e-116 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium234g00033 K16277 - gmx:100793731 744.962