Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium234g00020 ATGAATTCCATGGAAGGAAACTATCTGACCAGAAACACGGATAAAGGGGATAGGTTTGGCTTTGAGGAGCATTCATGGGGAAGTTCATGGCCTGCTAGAAACTATGCTTGTAGTTTTTGCAAGAGAGAGTTCAAATCTGCTCAAGCCTTGGGTGGCCACATGAATGTTCACAGAAGGGATAGGGCAAGGTTGAGATCTTCCTTACCCTCATCATCATGGGTTTCTGAGTGTCCTAAACCTAACCCTAGCATTATGCCAAACCCCACTCATCTTTCACCCTCCTCTCCATCTTCCTGTCTATCTAACACTAACCTTTTCAATTGTGCTCATTGTTCTCCACTTTATAGCCCTTCTTTGACTGTGTCGTTTTCACTGACCCCTCCGGTTTCTCTCAATGGAGACAAGAAACCAACACTCGCATCTTCCCAGTTTCTTACTCTTTCGGTTCCTCAGGAAAGTGAGGAAATTAAGGTTTGTAAGAACAAAGAGATTGGTTTGGGAGTTGAAGAAGTACAGGGTTGTGCAATAGGAGAGGAATGCAAGGTTTGTAGTAGTGAACATAGCATCAAGCTGGAGTTGGGAATAGGGTTTCTTAAACAACCAGAGAAGTTAGATTTGGAACTACGATTGGGGCACTGA 639 0.4382 MNSMEGNYLTRNTDKGDRFGFEEHSWGSSWPARNYACSFCKREFKSAQALGGHMNVHRRDRARLRSSLPSSSWVSECPKPNPSIMPNPTHLSPSSPSSCLSNTNLFNCAHCSPLYSPSLTVSFSLTPPVSLNGDKKPTLASSQFLTLSVPQESEEIKVCKNKEIGLGVEEVQGCAIGEECKVCSSEHSIKLELGIGFLKQPEKLDLELRLGH 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium234g00020 212 PANTHER OS07G0101800 PROTEIN 21 212 - -
Vium234g00020 212 SUPERFAMILY beta-beta-alpha zinc fingers 32 61 IPR036236 -
Vium234g00020 212 ProSiteProfiles Zinc finger C2H2 type domain profile. 35 62 IPR013087 -
Vium234g00020 212 Pfam C2H2-type zinc finger 35 59 - -
Vium234g00020 212 ProSitePatterns Zinc finger C2H2 type domain signature. 37 57 IPR013087 -
Vium234g00020 212 Gene3D Classic Zinc Finger 24 77 - -
Vium234g00020 212 SMART c2h2final6 35 57 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium234g00020 Vium-Chr234 215412 216510 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium234g00020 22 211 C2H2 Transcription Factor Family AT3G23130 38.462 2.02e-26 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium234g00020 zf-C2H2_6 6.9e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium234g00020 - - gmx:102660083 259.61