Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium234g00019 ATGGACTTAAACTACCCAGAAGATTTCTACTCCAACATCTCCACCCTAGAAACTTCTCACCATGATCTCCTCGGAACTGCCAGATCCTACGAGTGCATCTTTTGCAAGAGAGGCTTCACCACAGCACAAGCCTTGGGTGGACACATGAACATACACAGAAAACAAAGGGCCAACAACAACACCAAACCCACTGTCCCTCCTCCTTCAACTTCTAACAAAGTTGATGCAATCAACAACCATGCAGATCTCGTTCAAATTCCAACCCAATCCACTCCTTCTCATGCTAATCATCTTTCTTTTCCACCCACTTCACTCACTGTTACACCTTCCCATGCTCAGCTTTCGTCTGCAGAAAAAGACCAACTGGGACACGTCTTTCTGCAGGATTGGAGTACCACAAATTTGAGCTTCTACTCTAATCCATTGTGTCTTCATCAAATTAAGAATAAGTTTGAAGACACTGAAGAGAATGGCCTGGATTTGGAGCTCAGGTTGGGTCATCATCCATAG 510 0.4451 MDLNYPEDFYSNISTLETSHHDLLGTARSYECIFCKRGFTTAQALGGHMNIHRKQRANNNTKPTVPPPSTSNKVDAINNHADLVQIPTQSTPSHANHLSFPPTSLTVTPSHAQLSSAEKDQLGHVFLQDWSTTNLSFYSNPLCLHQIKNKFEDTEENGLDLELRLGHHP 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium234g00019 169 Gene3D Classic Zinc Finger 6 82 - -
Vium234g00019 169 ProSiteProfiles Zinc finger C2H2 type domain profile. 30 57 IPR013087 -
Vium234g00019 169 PANTHER OS07G0101800 PROTEIN 25 168 - -
Vium234g00019 169 ProSitePatterns Zinc finger C2H2 type domain signature. 32 52 IPR013087 -
Vium234g00019 169 Pfam C2H2-type zinc finger 30 55 - -
Vium234g00019 169 SUPERFAMILY beta-beta-alpha zinc fingers 28 56 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium234g00019 Vium-Chr234 203452 204433 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium234g00019 28 169 C2H2 Transcription Factor Family AT4G17810 31.544 7.29e-13 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium234g00019 - - vun:114163022 199.904