Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium234g00016 ATGGCTTCTGCAAGTGGAAATGGAGGCTCTAATGGCTCTGGCTCTCCTTGCGGGGCATGCAAGTTCCTCAGGCGAAAGTGTGCAGCTGACTGCATCTTTGCACCTTACTTTTGCTCAGAACAAGGCCCTGCTAGATTCGCTGCCATACATAAAGTGTTTGGTGCCAGCAATGTTTCCAAGCTGCTTTTGCATATACCAGCTCATGATCGTTGTGAAGCTGTTGTCACAATTGCTTATGAGGCTCAGGCTCGTATCAGAGACCCCGTCTATGGCTGTGTCTCTCACATTTTTGCCTTACAACAACAGGTGGCATGCTTGCAAGCACAGCTGATGCAGGTGAAGGCTCAGCTGGCTCAGAACCTGATGGAGTCGAGGAACATGGAGAATAATAATCATGAGTGGGCAGGGAATCATAGTGTTGCAATGAACCATCCATTTTGTCCCACTTACATGAACCCTATATCTCCTCAAAGCTCTCTTGAGTCAATTGATCACAGCAGCATGAACGATGGAATGAGCATGCAAGATATACAAAGCAGAGAGGAAAGAGCATACAACAACAATGAGTTGGGTGAGCTGCAAGAACTGGCGCTCAGAATGATGAGGAACTGA 612 0.4739 MASASGNGGSNGSGSPCGACKFLRRKCAADCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHIPAHDRCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLMQVKAQLAQNLMESRNMENNNHEWAGNHSVAMNHPFCPTYMNPISPQSSLESIDHSSMNDGMSMQDIQSREERAYNNNELGELQELALRMMRN 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium234g00016 203 Coils Coil 96 116 - -
Vium234g00016 203 Pfam Lateral organ boundaries (LOB) domain 16 114 IPR004883 -
Vium234g00016 203 ProSiteProfiles LOB domain profile. 15 117 IPR004883 -
Vium234g00016 203 PANTHER LOB DOMAIN CONTAINING PROTEIN 12 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium234g00016 Vium-Chr234 170506 172174 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium234g00016 3 203 AS2 family AT2G42430 54.286 4.68e-79 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium234g00016 LOB 7.3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium234g00016 K13944 - gmx:100801508 353.984