Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium234g00015 ATGACTGGTTCTCCGTGTGGAGCCTGCAAATTCTTGAGAAGGAAGTGTGTGAGAGGCTGTGTTTTTGCTCCTTACTTTTGCCATGAACAGGGTGCCACCCATTTTGCAGCCATTCATAAGGTCTTTGGCGCAAGCAATGTCTCAAAGCTACTTGCTCACCTTCCTGTCAGTGAACGTTGTGAAGCTGCTGTCACCATCTCTTATGAAGCTCAAGCTAGACTTCAAGATCCAATTTATGGCTGTGTTGCTCATATTTTTGCACTCCAACAACAGGTGGTGAATTTACAAGCACAAGTAGCTCATCTCAGGGAACAGGCAGGTCAGATCTATCTCAATGCCTCTGCCACTGAAAACCCTAATGAGAAATACTTTGGAAAATCTACCAATTTTCCGCAGTATCTTGAGAGTTGGTTCCAGACGGAGAATTCCAACTCGGCTTCACAATTTCTTCCTAAATTGTCCACCGATACTTCAACACAGTACTATGGAACTACTGATACCTTCATGGACCCAAACCCTATTGGAAATGATGACAATTCCGTAACAGTAGAGGAAAGCATCTTCTTTTCTAGCTTTGAAGAGAGTTGTAACTCCATGGCCTGTGACGTGCAAAGGCAGTGGACCTTTTATCAAATGGATAACCTTCAGTAA 651 0.4363 MTGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSERCEAAVTISYEAQARLQDPIYGCVAHIFALQQQVVNLQAQVAHLREQAGQIYLNASATENPNEKYFGKSTNFPQYLESWFQTENSNSASQFLPKLSTDTSTQYYGTTDTFMDPNPIGNDDNSVTVEESIFFSSFEESCNSMACDVQRQWTFYQMDNLQ 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium234g00015 216 Coils Coil 85 105 - -
Vium234g00015 216 Pfam Lateral organ boundaries (LOB) domain 5 102 IPR004883 -
Vium234g00015 216 ProSiteProfiles LOB domain profile. 4 106 IPR004883 -
Vium234g00015 216 PANTHER LOB DOMAIN CONTAINING PROTEIN 3 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium234g00015 Vium-Chr234 160862 162202 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium234g00015 5 131 AS2 family AT3G58190 75.194 2.11e-70 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium234g00015 LOB 1.1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium234g00015 K13945 K13944 gmx:100816960 341.273