Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium234g00012 ATGGGTAACAACTTGCACCAAGTACTCAGAAGCCTCTGTTTTAATACTCACTGGAACTACGCCATCTTTTGGAAGCTCAAACATCGTGCTCGAATGATCTTGACATGGGAGGACGCATACTATAACAATCCTGATGATTATGACTCTTCAGAAAATAAGCACTGCCAGAATATCTTGGAACAAATTGGTTATGGGAAATTTTCGCACAACGCATTAGGGTTAGCAGTGGCTAAGATGTCATATCATGCATATTCATTAGGAGAAGGTATTGTTGGACAGGTTGCTGTAACAGGAAAGCATAGGTGGATCTGTGCAGATAATCAGGTTGCAGGTTCTGGCTTGTCTTTTGAGTTTGCTGATGGGTGGCAGTCTCAGTTTTCTGCTGGAATCAGGACTATTGCTGTTGTTGCTGTAGCCCCACTTGGTGTTGTTCAGCTTGGTTCTCTCAATAAAGTGATTGAAGATATGGGGTTTGTAGCTCATATCAGAAATCTCTTTCAAAATTTCTCAATGGCCCAATGTCCTAGTCAAATACAGGGTAGTTTGAAGAGTTCTTTATCTCAGTTGGATATATCGAAGGAAAATTTGTCTTCAGATGTTGTGCCGACTGGCTTTTACAATGCACAGAAATCTATGAAGAGTGAAACAGCAGATGTTTTAATGTCCCTTCAATGTTCTGGGAGGAACTATGCACTTCATTCTGCTTGTCAGAAAATGTCTGATAACGTGGCCAAGAAGGAGGGGCCTGAATTGTACAGTGATGAAAGTTCCATTTTGCTTCAGTCAATATCCAATATGATGAATGTGGAGCATCATGATTTTGAAGAGATGAAACCTCTCTATGGGAGGAAGTGTGAAGAAGGAAGTAGTAGTTGTAAAGATGTGAGGTTTGAATCAGAAAACAATGTTTCGTCATTTTTAAGTGACTTTATTACAGATAATGATTTAATATGTCCATCAGAAAAAGTCAGAGTTGATTCTGCATGTTTTCCCTCAGCTTTTCTTGATACAGTTGTTTGTGAAACTGATAAGTTGCATTGTGTGGATAATAACCAAAAAGGGGTGTTGAATTTCACCCAACCTTCAGATGCAAACTCCCAACATGTTGAAAAGTCAAAGTTTCGTACTGAGCCTTCTTACAATGATATGTCAAATGTGTTGAATTTCCCTGCTGGCTGTGAGCTACATGAAGCACTTGGACCATCTTTTCTGAAAGGGAGTAAAAATTTTGATTGGGCAGCACAGTTTAATCAAGATATGAAAACTGTTGAAATGTCAGATGAGATTAGCACTAGCCAATTGACTTCTGAATCTCGTCCAGAGCATCTTTTGGAAGCACTGGTGGCCAACGTTTGCCATAGTAATAATGATGTTAATAGTGAATTATCGTTTTGTACATCAATGCAATCTGCAATGGCCTCGGGAAAAAATCATGAAGCTTCTACTCACAATGTGTATGCTATTAATTCAGAAGGTTATTCAATAGATCAGTTCTCTCTTGTCAAAGAGGACAAACACCATTCCTTGAGTTCATCATCAGGGATATGTGGTGTGATGTCCTCCAAAGGTGTTTCATCTACATTCCCTAGTTCAAGTAGTGGACAACTTGAAAGGTCGTCTGAACCATCTAAGAACAGCAAAAAGAGGGCCAGGCCTGGGGAAAGTTGTAGGCCTCGGCCAAGGGACAGGCAATTAATCCAAGATCGTATTAAGGAGCTGAGAGAGTTGGTGCCAAATGGAGCAAAGTGCAGTATTGATTCCCTACTGGAGCGCGCCATAAAGCACATGCTCTTTCTCCAAAGCATAACTAAACATGCTGACAAGCTAACTGACTTTGGTGATACAAAGTCAAAGCTGCATCACATGGAAGCAGACATTCTTGGATCCTCTAGTTATGAGCAGGGCTCAAGCTGGGCAATGGAGGTAGGGGGTCATCTGAAAGTTCATTCAATATTAGTGGAGAATCTTAGCAAGAATGGACAGATGCTTGTTGAGATGCTCTGTGAGGAGTGCAGCCATTTTCTTGAAATAGCAGAAGCCATAAGAAGTTTGGGTCTTACCATTTTGAAAGGTGGAACTAAAGTTCATGGTGAAAAGATATGGATATGCTTTGTTGTCGAGGGTCAAAACAACAGAAATGTACACAGATTGGATATCTTGTGGCCGCTTGTTCAAATACTGCAATCGAAGAGCACGGTGTATTCACAATAA 2211 0.4052 MGNNLHQVLRSLCFNTHWNYAIFWKLKHRARMILTWEDAYYNNPDDYDSSENKHCQNILEQIGYGKFSHNALGLAVAKMSYHAYSLGEGIVGQVAVTGKHRWICADNQVAGSGLSFEFADGWQSQFSAGIRTIAVVAVAPLGVVQLGSLNKVIEDMGFVAHIRNLFQNFSMAQCPSQIQGSLKSSLSQLDISKENLSSDVVPTGFYNAQKSMKSETADVLMSLQCSGRNYALHSACQKMSDNVAKKEGPELYSDESSILLQSISNMMNVEHHDFEEMKPLYGRKCEEGSSSCKDVRFESENNVSSFLSDFITDNDLICPSEKVRVDSACFPSAFLDTVVCETDKLHCVDNNQKGVLNFTQPSDANSQHVEKSKFRTEPSYNDMSNVLNFPAGCELHEALGPSFLKGSKNFDWAAQFNQDMKTVEMSDEISTSQLTSESRPEHLLEALVANVCHSNNDVNSELSFCTSMQSAMASGKNHEASTHNVYAINSEGYSIDQFSLVKEDKHHSLSSSSGICGVMSSKGVSSTFPSSSSGQLERSSEPSKNSKKRARPGESCRPRPRDRQLIQDRIKELRELVPNGAKCSIDSLLERAIKHMLFLQSITKHADKLTDFGDTKSKLHHMEADILGSSSYEQGSSWAMEVGGHLKVHSILVENLSKNGQMLVEMLCEECSHFLEIAEAIRSLGLTILKGGTKVHGEKIWICFVVEGQNNRNVHRLDILWPLVQILQSKSTVYSQ 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium234g00012 736 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 1 733 IPR043561 GO:0003700|GO:0006355
Vium234g00012 736 MobiDBLite consensus disorder prediction 526 540 - -
Vium234g00012 736 MobiDBLite consensus disorder prediction 541 565 - -
Vium234g00012 736 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 5 166 IPR025610 -
Vium234g00012 736 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 550 599 IPR011598 GO:0046983
Vium234g00012 736 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 563 604 IPR036638 GO:0046983
Vium234g00012 736 MobiDBLite consensus disorder prediction 526 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium234g00012 Vium-Chr234 124496 131734 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium234g00012 1 731 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 40.052 4.06e-152 458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium234g00012 - - ccaj:109796613 1245.34