Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium234g00009 ATGGCTCTCAACCCCATTCCCTCTTACAAGCTGCTTCCACCCATCAAAACTCATGCTAGCACAATCCTTCACAAACCAAAACCTCCTTCAAATTCTGCTTCTGCTTTACCCATACTTGCCATCATAGTTCCCACCATCTTTGTCACTGTTTTTATACTCATCACCTACTTAACTCTTGTCACCAAATGCTTCTCAAACTTGTACCTATTTCACCCCTTGAGATGGTTTTTCTCCCTCCTTACCCCTCGACATGAAGATCAAGACCCCTTCATAGCACTCTCTCCCAGGATGTGGAGCCAAGGACTTGATGAATCTGCAATCAAAGAAATCCCAACACTTCAATTCACAAAAGGAGATGTTGAAAAGAATCATCAAAGTGTGTTGTATGGCTGCGTGATTTGTTTGACTGAGTTTCAAGATCATGATATGCTGAAAGTTCTTCCCATTTGCAAACATGCCTTTCACTTTCACTGCATTGACGTTTGGCTTCAAACCAATTCCAATTGCCCTCTTTGTAGATCAAGCATTGTATCAGGCAACACACACTGTCCAACGGATCATATCATAGCTCCAAGCTCTTCTCCTCAGGATTCTCAATTGCTCTCTTACGTGGACAGTGATGAGGATTTTGTTGTCATTGAACTTGAGGGAGAACATGAGGAAGCACTGCCACAGATGATGCAACAAGAAAGAAGTGACTCAAGGGAAAGAGTTGTAGAGAGTAGAAGTCACTCTATTACAAGGAAGTGTCACCATGTTTCCATCATGGGAGATGAGTGCATTGATGTTAGGAAGAAAGACGAGCAGTTTTCTATTCAGCCTATTCGAAGATCTTTCTCAATGGATTCAGCAAACGATAGGCAAGTTTACTTGGATTTTCAAACCATCATGCAACAGAATAATAGGCATCTAAAATCAGGCTAG 924 0.4177 MALNPIPSYKLLPPIKTHASTILHKPKPPSNSASALPILAIIVPTIFVTVFILITYLTLVTKCFSNLYLFHPLRWFFSLLTPRHEDQDPFIALSPRMWSQGLDESAIKEIPTLQFTKGDVEKNHQSVLYGCVICLTEFQDHDMLKVLPICKHAFHFHCIDVWLQTNSNCPLCRSSIVSGNTHCPTDHIIAPSSSPQDSQLLSYVDSDEDFVVIELEGEHEEALPQMMQQERSDSRERVVESRSHSITRKCHHVSIMGDECIDVRKKDEQFSIQPIRRSFSMDSANDRQVYLDFQTIMQQNNRHLKSG 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium234g00009 307 SUPERFAMILY RING/U-box 106 179 - -
Vium234g00009 307 ProSiteProfiles Zinc finger RING-type profile. 131 173 IPR001841 -
Vium234g00009 307 PANTHER RING-H2 FINGER PROTEIN ATL16 15 301 IPR044600 GO:0016567|GO:0016740
Vium234g00009 307 Pfam Ring finger domain 131 173 IPR001841 -
Vium234g00009 307 SMART ring_2 131 172 IPR001841 -
Vium234g00009 307 CDD RING-H2_EL5-like 131 173 - -
Vium234g00009 307 FunFam E3 ubiquitin-protein ligase ATL6 92 179 - -
Vium234g00009 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 178 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium234g00009 Vium-Chr234 85197 86120 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium234g00009 30 304 C3H Transcription Factor Family AT1G04360 39.935 6.54e-61 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium234g00009 K19041 - gmx:100809883 352.058