Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium234g00008 ATGGAGGAGTTAAAGGAAAAGGTGAGTGAAAAGGAAACAGAGAAAATAAAGTACAGAGGAGTAAGAAGGAGGCCATGGGGAAAGTTTGCAGCAGAGATTAGAGATTCAGCTAGAAATGGAGCTCGCGTGTGGCTTGGGACCTTTAACACTGCTGAGGAAGCAGCAAGAGCTTATGATCGTGCTGCCTTTGAAATGAGAGGTGCTATGGCCATTCTCAACTTCCCACATGAACACCCTCCTTTCACTTCATCATCTAAAACTGAACATGCTAAACAAGTTGTCGTATTTGAGTGTCTCGATGACAAATTGTTGGAGGAACTCCTTGATTGTGATCACAAAAACATGAATCACAACTTCGCCAACTAG 366 0.4317 MEELKEKVSEKETEKIKYRGVRRRPWGKFAAEIRDSARNGARVWLGTFNTAEEAARAYDRAAFEMRGAMAILNFPHEHPPFTSSSKTEHAKQVVVFECLDDKLLEELLDCDHKNMNHNFAN 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium234g00008 121 Gene3D AP2/ERF domain 16 76 IPR036955 GO:0003700|GO:0006355
Vium234g00008 121 SUPERFAMILY DNA-binding domain 17 77 IPR016177 GO:0003677
Vium234g00008 121 SMART rav1_2 17 81 IPR001471 GO:0003700|GO:0006355
Vium234g00008 121 FunFam Ethylene-responsive transcription factor 2 17 76 - -
Vium234g00008 121 Coils Coil 1 21 - -
Vium234g00008 121 PANTHER DNA-BINDING DOMAIN 10 86 IPR044808 GO:0003700|GO:0009873
Vium234g00008 121 ProSiteProfiles AP2/ERF domain profile. 17 75 IPR001471 GO:0003700|GO:0006355
Vium234g00008 121 Pfam AP2 domain 17 67 IPR001471 GO:0003700|GO:0006355
Vium234g00008 121 CDD AP2 17 76 IPR001471 GO:0003700|GO:0006355
Vium234g00008 121 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Vium234g00008 121 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium234g00008 Vium-Chr234 81290 81937 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium234g00008 12 113 AP2-EREBP Transcription Factor Family AT3G23230 54.839 1.72e-40 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium234g00008 AP2 1.6e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium234g00008 - - gmx:100800069 178.718