Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium234g00007 ATGGATTTTAATTCATCGTTGTTTTCGTTCAACAACAATGCAACAAATGAATCGTCCTTATCGTTACAAGAGCACACCTCTGATATCACACACGATGGTTCAAATCCACAGCCTCTGTCTATAGGCCCAACGAAGAAAGAGAGGAAACCCTATAGAGGAGTAAGAAGAAGGCCATGGGGAAAATTCGCAGCAGAAATACGAGACCCTACAAGAAATGGTGTTCGAGTATGGATTGGAACATTTGACACTGCTGAAGAAGCTGCTTTAGCTTATGACCAAGCAGCTTTCTTGACAAGGGGTGTTCTTGCTACCCTTAACTTTTCAGCACAAAGGGTAGTGGAGTCCCTCGAAGACATGGGTTTCAAGGCACTCAGAAATGGTGTCTCACCCTTGTTGGAACTCAAAAGGATGCACGTGATGAGAACAAAATCTAGGGTTAGCAGGAGTGGTGCTAAAAAGGTTAAAAGGGTTTGCAGCAAATTGAAACCGGATCCTATTGCTGAAACTGTGTTGGTCTTGGAGGATTTGGGTCCTGAATACCTAGAGCAACTTTTGACCTTCACTTCCCCTGGTTCTTGGTCCTGA 585 0.441 MDFNSSLFSFNNNATNESSLSLQEHTSDITHDGSNPQPLSIGPTKKERKPYRGVRRRPWGKFAAEIRDPTRNGVRVWIGTFDTAEEAALAYDQAAFLTRGVLATLNFSAQRVVESLEDMGFKALRNGVSPLLELKRMHVMRTKSRVSRSGAKKVKRVCSKLKPDPIAETVLVLEDLGPEYLEQLLTFTSPGSWS 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium234g00007 194 PANTHER DNA-BINDING DOMAIN 35 185 IPR044808 GO:0003700|GO:0009873
Vium234g00007 194 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Vium234g00007 194 PRINTS Ethylene responsive element binding protein signature 74 90 IPR001471 GO:0003700|GO:0006355
Vium234g00007 194 CDD AP2 51 107 IPR001471 GO:0003700|GO:0006355
Vium234g00007 194 MobiDBLite consensus disorder prediction 26 54 - -
Vium234g00007 194 FunFam Ethylene-responsive transcription factor 2 49 109 - -
Vium234g00007 194 MobiDBLite consensus disorder prediction 26 41 - -
Vium234g00007 194 Pfam AP2 domain 51 96 IPR001471 GO:0003700|GO:0006355
Vium234g00007 194 ProSiteProfiles AP2/ERF domain profile. 50 108 IPR001471 GO:0003700|GO:0006355
Vium234g00007 194 SMART rav1_2 50 114 IPR001471 GO:0003700|GO:0006355
Vium234g00007 194 Gene3D AP2/ERF domain 50 110 IPR036955 GO:0003700|GO:0006355
Vium234g00007 194 SUPERFAMILY DNA-binding domain 50 109 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium234g00007 Vium-Chr234 74281 74970 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium234g00007 10 193 AP2-EREBP Transcription Factor Family AT3G23240 48.936 2.01e-51 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium234g00007 AP2 4.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium234g00007 K14516 - gmx:100818907 246.899