Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium234g00006 ATGGAGGGAGGGAGAGGAGTTGTGAATGGAAACGCTTCAAACGCAGAGGTGAGGTACAGAGGGATTCGTAGGAGGCCATGGGGAAAGTTTGCAGCAGAGATTCGTGACCCTACAAGAAAAGGTGCTCGAATATGGCTTGGAACATTTGACACTGCTGAACAAGCTGCACGTGCTTACGATGCTGCTGCTTTTCGTTTTCGGGGTCACAAGGCCATACTCAACTTCCCTAACGAGTATGGCCACACCACTCCTAATCCTAACGTGTTTTCAACTTCACAGCCTCTTCGTTCTTCTTCTTTTCCTTCTTACTCTGGTGGTGCCGAGGGTTCTTCACAACAACAGCGAAACGCTGCTGCAACTTTTGAATTGGAATACTTGGACAATAAGTTGTTGGAAGAACTCCTTCAGACGCCTGATGGAACAGGCAACGACTCCAATTAA 441 0.4785 MEGGRGVVNGNASNAEVRYRGIRRRPWGKFAAEIRDPTRKGARIWLGTFDTAEQAARAYDAAAFRFRGHKAILNFPNEYGHTTPNPNVFSTSQPLRSSSFPSYSGGAEGSSQQQRNAAATFELEYLDNKLLEELLQTPDGTGNDSN 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium234g00006 146 PANTHER DNA-BINDING DOMAIN 14 135 IPR044808 GO:0003700|GO:0009873
Vium234g00006 146 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Vium234g00006 146 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Vium234g00006 146 Gene3D AP2/ERF domain 17 77 IPR036955 GO:0003700|GO:0006355
Vium234g00006 146 FunFam Ethylene-responsive transcription factor 2 17 77 - -
Vium234g00006 146 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Vium234g00006 146 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Vium234g00006 146 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Vium234g00006 146 MobiDBLite consensus disorder prediction 84 116 - -
Vium234g00006 146 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Vium234g00006 146 Pfam AP2 domain 18 69 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium234g00006 Vium-Chr234 59967 60606 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium234g00006 13 137 AP2-EREBP Transcription Factor Family AT3G23230 59.200 2.44e-41 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium234g00006 AP2 4.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium234g00006 - - gmx:100778998 214.542