Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium234g00005 ATGGATTTGCCTTTGGATTTAGATTTTGATTATCATCTTTTTCCAAACCAAAACCTTAACTTCTTCGAAAACGCTGGCGACCCCTTTTCCTGGGACTACAATTTTGACGACATCTTCAACTTCAGCTACGACCAAACCAAGGAATCATCTTCGGCGTCCAACGTTTCCGGCTCTGTGGGAAGCGTTGAGTTACACGAAGTATCGTCCGACAACACAACCTACGAAGACGTATCCAAAGAAACAGAGCCGGTGGCGGCGCCGGTGCCGGTGAAGGAGGGTAGGATGTACAGAGGAGTGAGAAAGAGGCCGTGGGGGAAGTTCGCGGCCGAGATAAGGGATTCGACTCGAAACGGCGTTCGGGTGTGGATTGGAACGTTCGACACGGCGGAAGCGGCGGCTCTGGCTTACGACCAGGCGGCGTTCTCGACGAGGGGGTCTTTAGCGGTGCTGAATTTCCCGGTGGAAGTGGTGAGAGAGTCCCTGAAAGACATGCCGAGTAAGCCTTGGGAGGAAGGTTCTTCCCCTGTTTTGGCTCTCAAGAGAAAACACACTATGAGGAAAAAGTCGAGTTCGAAGAAGAAGAAAAGCAAAAGCGATGGCAGGGAGCAGTTGGAATTCTGCACCACTTCGCAGAATGTGCTGGTGTTCGAGGATTTGGGTGCCGAATATCTAGAACAGCTTTTGAGTTTGACTTATTAG 699 0.5079 MDLPLDLDFDYHLFPNQNLNFFENAGDPFSWDYNFDDIFNFSYDQTKESSSASNVSGSVGSVELHEVSSDNTTYEDVSKETEPVAAPVPVKEGRMYRGVRKRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFSTRGSLAVLNFPVEVVRESLKDMPSKPWEEGSSPVLALKRKHTMRKKSSSKKKKSKSDGREQLEFCTTSQNVLVFEDLGAEYLEQLLSLTY 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium234g00005 232 SMART rav1_2 95 159 IPR001471 GO:0003700|GO:0006355
Vium234g00005 232 MobiDBLite consensus disorder prediction 182 202 - -
Vium234g00005 232 ProSiteProfiles AP2/ERF domain profile. 95 153 IPR001471 GO:0003700|GO:0006355
Vium234g00005 232 PANTHER DNA-BINDING DOMAIN 58 228 IPR044808 GO:0003700|GO:0009873
Vium234g00005 232 FunFam Ethylene-responsive transcription factor 2 94 155 - -
Vium234g00005 232 Pfam AP2 domain 96 145 IPR001471 GO:0003700|GO:0006355
Vium234g00005 232 CDD AP2 96 154 IPR001471 GO:0003700|GO:0006355
Vium234g00005 232 Gene3D AP2/ERF domain 95 156 IPR036955 GO:0003700|GO:0006355
Vium234g00005 232 SUPERFAMILY DNA-binding domain 95 155 IPR016177 GO:0003677
Vium234g00005 232 PRINTS Ethylene responsive element binding protein signature 96 107 IPR001471 GO:0003700|GO:0006355
Vium234g00005 232 PRINTS Ethylene responsive element binding protein signature 119 135 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium234g00005 Vium-Chr234 41595 42640 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium234g00005 88 228 AP2-EREBP Transcription Factor Family AT2G31230 57.407 3.53e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium234g00005 AP2 3.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium234g00005 K14516 - gmx:100779524 315.464