Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2346g00005 ATGGGTACTCCAAATGGAAGAGGAATTCACAAGTCTGATGATGAAATTCCTTTTGACTCCGACATAAATTATCACTCGGCTGAATCTAGTCTGGTGGAGGTACTTGGATCACATTCTGGAGAATCTCTGACTGTTCATCATGAAACGTTGGCTGGTATTGTTTATAGGAGCATACAAGTTGTGATTTTCTCTAACAAACTCAACTTGCTTATGCCTTTTGGGCCTGTTGCAATTCTTGTGCAGAAGTTGACTGCTCATCTTGGTTGGGTCTTTGCTCTGAGTTTGTTGGGTATAATGCCTCTGGCGGAGCGGTTAGGTTATGCTACCGAGCAGCTGGCATTTTACAGTGGAGATACTGTTGGGGGTCTTTTAAATGCTACATTTGGAAATGCAACAGAATTGATCATCTCAATATATGCACTGAAAAGTGGAATGACACGGGTTGTTCAGCTCTCTTTGCTGGGATCAATTTTGTCCAATATGTTACTAGTTCTTGGATGTGCATTCCTATGCGGTGGGATTGTTAATCATAAGAAAGAACAAGTGTTTAACAAGGCAACTGCTTCTGTGAATTCAGGATTACTGTTGATGGCAGTCATGGGCATACTTTTTCCAGCTGTTCTACACTACACACATACCGAGGTTCATGTTGGGAAGTCAGAGTTGTCCCTTTCAAGATTCAGCAGCTGTGTCATGCTTGTGGCCTATGCTGCATACCTGTTTTTTCAGTTAAAAAGTCAAAGAAGTCTCTATCTCTCTGTGAACGAGGAAGAGGGTCAGAGTGGAAACAACTCAAATGACGATGAATCACCAGATATTTCGAAATGGGAATCAATAATATGGCTTTCCGTTATGACTGCTTGGATATCAATCTTGTCTGAATACCTGGTTGGCGCTATAGAGGGAGCATCTACTGCATGGGAAATTCCAATTGCATTTATCAGTGTCATATTGCTTCCGCTAGTGGGGAATGCGGCTGAGCATGCCAGTGCTATAATGTTTGCCATGAAAGATAAACTTGACATTTCCATAGGGGTTGCAATAGGCTCATCCACACAGATATCTATGTTTGTGATACCATTTTGTGTTGTTATTGGCTGGATAATGGGGCATTCTATGGACTTGAACTTTCAACTATTTGAAACTGCAGCACTATTTCTTACTGTTATAGTTGTAGCCTTCATGTTGCAGGAAGGAACTGCTAATTACTTCAAAGGATTGATGCTTATTCTTTGCTATCTGATTGTGGCAGCCAGTTTTTATGTACATATAGATTCCTCTGAATAG 1287 0.4103 MGTPNGRGIHKSDDEIPFDSDINYHSAESSLVEVLGSHSGESLTVHHETLAGIVYRSIQVVIFSNKLNLLMPFGPVAILVQKLTAHLGWVFALSLLGIMPLAERLGYATEQLAFYSGDTVGGLLNATFGNATELIISIYALKSGMTRVVQLSLLGSILSNMLLVLGCAFLCGGIVNHKKEQVFNKATASVNSGLLLMAVMGILFPAVLHYTHTEVHVGKSELSLSRFSSCVMLVAYAAYLFFQLKSQRSLYLSVNEEEGQSGNNSNDDESPDISKWESIIWLSVMTAWISILSEYLVGAIEGASTAWEIPIAFISVILLPLVGNAAEHASAIMFAMKDKLDISIGVAIGSSTQISMFVIPFCVVIGWIMGHSMDLNFQLFETAALFLTVIVVAFMLQEGTANYFKGLMLILCYLIVAASFYVHIDSSE 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2346g00005 428 FunFam Vacuolar cation/proton exchanger 118 257 - -
Vium2346g00005 428 NCBIfam calcium/proton exchanger 57 420 - -
Vium2346g00005 428 FunFam Vacuolar cation/proton exchanger 266 422 - -
Vium2346g00005 428 NCBIfam calcium/proton exchanger 71 421 IPR004798 GO:0006816|GO:0015369
Vium2346g00005 428 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 42 425 IPR004713 GO:0006812|GO:0008324|GO:0016020
Vium2346g00005 428 Gene3D - 116 258 IPR044880 -
Vium2346g00005 428 Gene3D - 264 422 IPR044880 -
Vium2346g00005 428 Pfam Sodium/calcium exchanger protein 279 419 IPR004837 GO:0016020|GO:0055085
Vium2346g00005 428 Pfam Sodium/calcium exchanger protein 87 244 IPR004837 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2346g00005 Vium-Chr2346 20628 25623 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2346g00005 19 428 Antiporters AT1G55730 73.171 0.0 599
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2346g00005 K07300 - gmx:100799276 772.696