Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2346g00004 ATGGAGACTCCGGTTGAAGGGAAACCTACTCGTCTTGCATCGGGGTTCTCAGATAACTTGTCTGAGACTTGCAAGATGGGTACTCCAAATGGAAGAGGAATTCACAAGTCTGATGATGAAATTCCTTTTGACTCCGACATAAATTATCACTCGGCTGAATCTAGTCTGGTGGAGGTACTTGGATCACATTCTGGAGAATCTCTGACTGTTCATCATGAAACGTTGGCTGGTATTGTTTATAGGAGCATACAAGTTGTGATTTTCTCTAACAAACTCAACTTGCTTATGCCTTTTGGGCCTGTTGCAATTCTTGTGCAGAAGTTGACTGCTCATCTTGGTTGGGTCTTTGCTCTGAGTTTGTTGGGTATAATGCCTCTGGCGGAGCGGTTAGGTTATGCTACCGAGCAGCTGGCATTTTACAGTGGAGATACTGTTGGGGGTCTTTTAAATGCTACATTTGGAAATGCAACAGAATTGATCATCTCAATATATGCACTGAAAAGTGGAATGACACGGGTTGTTCAGCTCTCTTTGCTGGGATCAATTTTGTCCAATATGTTACTAGTTCTTGGATGTGCATTCCTATGCGGTGGGATTGTTAATCATAAGAAAGAACAAGTGTTTAACAAGGCAACTGCTTCTGTGAATTCAGGATTACTGTTGATGGCAGTCATGGGCATACTTTTTCCAGCTGTTCTACACTACACACATACCGAGGTTCATGTTGGGAAGTCAGAGTTGTCCCTTTCAAGATTCAGCAGCTGTGTCATGCTTGTGGCCTATGCTGCATACCTGTTTTTTCAGTTAAAAAGTCAAAGAAGTCTCTATCTCTCTGTGAACGAGGAAGAGGGTCAGAGTGGAAACAACTCAAATGACGATGAATCACCAGATATTTCGAAATGGGAATCAATAATATGGCTTTCCGTTATGACTGCTTGGATATCAATCTTGTCTGAATACCTGGTTGGCGCTATAGAGGGAGCATCTACTGCATGGGAAATTCCAATTGCATTTATCAGTGTCATATTGCTTCCGCTAGTGGGGAATGCGGCTGAGCATGCCAGTGCTATAATGTTTGCCATGAAAGATAAACTTGACATTTCCATAGGGGTTGCAATAGGCTCATCCACACAGATATCTATGTTTGTGATACCATTTTGTGTTGTTATTGGCTGGATAATGGGGCATTCTATGGACTTGAACTTTCAACTATTTGAAACTGCAGCACTATTTCTTACTGTTATAGTTGTAGCCTTCATGTTGCAGGAAGGAACTGCTAATTACTTCAAAGGATTGATGCTTATTCTTTGCTATCTGATTGTGGCAGCCAGTTTTTATGTACATATAGATTCCTCTGAATAG 1362 0.4148 METPVEGKPTRLASGFSDNLSETCKMGTPNGRGIHKSDDEIPFDSDINYHSAESSLVEVLGSHSGESLTVHHETLAGIVYRSIQVVIFSNKLNLLMPFGPVAILVQKLTAHLGWVFALSLLGIMPLAERLGYATEQLAFYSGDTVGGLLNATFGNATELIISIYALKSGMTRVVQLSLLGSILSNMLLVLGCAFLCGGIVNHKKEQVFNKATASVNSGLLLMAVMGILFPAVLHYTHTEVHVGKSELSLSRFSSCVMLVAYAAYLFFQLKSQRSLYLSVNEEEGQSGNNSNDDESPDISKWESIIWLSVMTAWISILSEYLVGAIEGASTAWEIPIAFISVILLPLVGNAAEHASAIMFAMKDKLDISIGVAIGSSTQISMFVIPFCVVIGWIMGHSMDLNFQLFETAALFLTVIVVAFMLQEGTANYFKGLMLILCYLIVAASFYVHIDSSE 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2346g00004 453 Pfam Sodium/calcium exchanger protein 304 444 IPR004837 GO:0016020|GO:0055085
Vium2346g00004 453 Pfam Sodium/calcium exchanger protein 112 269 IPR004837 GO:0016020|GO:0055085
Vium2346g00004 453 MobiDBLite consensus disorder prediction 1 20 - -
Vium2346g00004 453 NCBIfam calcium/proton exchanger 82 445 - -
Vium2346g00004 453 NCBIfam calcium/proton exchanger 96 446 IPR004798 GO:0006816|GO:0015369
Vium2346g00004 453 FunFam Vacuolar cation/proton exchanger 291 447 - -
Vium2346g00004 453 Gene3D - 141 283 IPR044880 -
Vium2346g00004 453 Gene3D - 289 447 IPR044880 -
Vium2346g00004 453 FunFam Vacuolar cation/proton exchanger 143 282 - -
Vium2346g00004 453 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 65 450 IPR004713 GO:0006812|GO:0008324|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2346g00004 Vium-Chr2346 20628 25626 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2346g00004 44 453 Antiporters AT1G55730 72.683 0.0 599
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2346g00004 K07300 - gmx:100799276 813.913