Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2346g00003 ATGGAGACTCCGGTTGAAGGGAAACCTACTCGTCTTGCATCGGGGTTCTCAGATAACTTGTCTGAGACTTGCAAGATGGGTACTCCAAATGGAAGAGGAATTCACAAGTCTGATGATGAAATTCCTTTTGACTCCGACATAAATTATCACTCGGCTGAATCTAGTCTGGTGGAGGTACTTGGATCACATTCTGGAGAATCTCTGACTGTTCATCATGAAACGTTGGCTGGTATTGTTTATAGGAGCATACAAGTTGTGATTTTCTCTAACAAACTCAACTTGCTTATGCCTTTTGGGCCTGTTGCAATTCTTGTGCAGAAGTTGACTGCTCATCTTGGTTGGGTCTTTGCTCTGAGTTTGTTGGGTATAATGCCTCTGGCGGAGCGGCAGCTGGCATTTTACAGTGGAGATACTGTTGGGGGTCTTTTAAATGCTACATTTGGAAATGCAACAGAATTGATCATCTCAATATATGCACTGAAAAGTGGAATGACACGGGTTGTTCAGCTCTCTTTGCTGGGATCAATTTTGTCCAATATGTTACTAGTTCTTGGATGTGCATTCCTATGCGGTGGGATTGTTAATCATAAGAAAGAACAAGTGTTTAACAAGGCAACTGCTTCTGTGAATTCAGGATTACTGTTGATGGCAGTCATGGGCATACTTTTTCCAGCTGTTCTACACTACACACATACCGAGGTTCATGTTGGGAAGTCAGAGTTGTCCCTTTCAAGATTCAGCAGCTGTGTCATGCTTGTGGCCTATGCTGCATACCTGTTTTTTCAGTTAAAAAGTCAAAGAAGTCTCTATCTCTCTGTGAACGAGGAAGAGGGTCAGAGTGGAAACAACTCAAATGACGATGAATCACCAGATATTTCGAAATGGGAATCAATAATATGGCTTTCCGTTATGACTGCTTGGATATCAATCTTGTCTGAATACCTGGTTGGCGCTATAGAGGGAGCATCTACTGCATGGGAAATTCCAATTGCATTTATCAGTGTCATATTGCTTCCGCTAGTGGGGAATGCGGCTGAGCATGCCAGTGCTATAATGTTTGCCATGAAAGATAAACTTGACATTTCCATAGGGGTTGCAATAGGCTCATCCACACAGATATCTATGTTTGTGATACCATTTTGTGTTGTTATTGGCTGGATAATGGGGCATTCTATGGACTTGAACTTTCAACTATTTGAAACTGCAGCACTATTTCTTACTGTTATAGTTGTAGCCTTCATGTTGCAGGAAGGAACTGCTAATTACTTCAAAGGATTGATGCTTATTCTTTGCTATCTGATTGTGGCAGCCAGTTTTTATGTACATATAGATTCCTCTGAATAG 1344 0.4144 METPVEGKPTRLASGFSDNLSETCKMGTPNGRGIHKSDDEIPFDSDINYHSAESSLVEVLGSHSGESLTVHHETLAGIVYRSIQVVIFSNKLNLLMPFGPVAILVQKLTAHLGWVFALSLLGIMPLAERQLAFYSGDTVGGLLNATFGNATELIISIYALKSGMTRVVQLSLLGSILSNMLLVLGCAFLCGGIVNHKKEQVFNKATASVNSGLLLMAVMGILFPAVLHYTHTEVHVGKSELSLSRFSSCVMLVAYAAYLFFQLKSQRSLYLSVNEEEGQSGNNSNDDESPDISKWESIIWLSVMTAWISILSEYLVGAIEGASTAWEIPIAFISVILLPLVGNAAEHASAIMFAMKDKLDISIGVAIGSSTQISMFVIPFCVVIGWIMGHSMDLNFQLFETAALFLTVIVVAFMLQEGTANYFKGLMLILCYLIVAASFYVHIDSSE 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2346g00003 447 MobiDBLite consensus disorder prediction 1 20 - -
Vium2346g00003 447 NCBIfam calcium/proton exchanger 98 440 IPR004798 GO:0006816|GO:0015369
Vium2346g00003 447 NCBIfam calcium/proton exchanger 82 439 - -
Vium2346g00003 447 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 65 444 IPR004713 GO:0006812|GO:0008324|GO:0016020
Vium2346g00003 447 Coils Coil 445 447 - -
Vium2346g00003 447 Gene3D - 134 277 IPR044880 -
Vium2346g00003 447 Gene3D - 283 441 IPR044880 -
Vium2346g00003 447 FunFam Vacuolar cation/proton exchanger 137 276 - -
Vium2346g00003 447 Pfam Sodium/calcium exchanger protein 130 263 IPR004837 GO:0016020|GO:0055085
Vium2346g00003 447 Pfam Sodium/calcium exchanger protein 298 438 IPR004837 GO:0016020|GO:0055085
Vium2346g00003 447 FunFam Vacuolar cation/proton exchanger 285 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2346g00003 Vium-Chr2346 20628 25628 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2346g00003 44 447 Antiporters AT1G55730 71.220 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2346g00003 K07300 - gmx:100799276 795.423