Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2342g00026 ATGGCCTCAGATGCTTCCTATGACAAGAACAATGTGTTTCGGAAACTCAAGGCAAAGTCTGAAAACAAGATGTGTTTCGATTGTAATGCAAAAAATCCAACTTGGGCCTCCGTCACCTATGGGATCTTCCTCTGCATCGATTGTTCCGCTGCACATCGTAGTCTCGGTGTCCATGTCAGTTTTGTCAGATCAACAAACTTAGACATGTGGAGTCCAGAGCAATTGAAAACGATGAGCTTGGGAGGAAACAACCGTGCACGAAATTTCTTTAAGCAGCATGGTTGGACTGATGGTGGTAAAGTAGAGGCCAAATATACATCAAGAGCTGCGGAGTTATATAGACAAATTCTTTCTAAGGAAGTAGCTAAAAGTATGACAGATAAGGAGGTAGATTCACCATCATCGCCTACTGCTTCTCAGTTTGAACAAGTTGTTGAAGAACTTCCTCAAGTAAAGACTAATGAATCCCCAAACGAAAGTGCTTATTCACACACAACAGTTTCTAATACTGTCAGAAAACCTATATCTGCTAAAAAAACAAAAAAAACTGTCGGACTTGGTGCTAGAAAGCTTACTAGAAAGTCATGTGAGAATCTGTACGAGCAAAAACCAGAAGTACCAGCAACCGCAGCAAAGAAGCATACACTTTCAGGGTCATCATCTACATCACGATTTGAGTATATAGAAAATGACCAATCGGTTGATTTGAATTCTAAAGGCAAGGGTCGCTTAGTAAGGCATGTATCCTTACCAGAGTCATCAAGCGTCTTTGTAGACTTCTTAATGGATAGTGGTTCTCCAAAGGAATTTGGGTCAAATTCATCAAAAGACACAATTCAGGAGTCCAACGAAGCAAGAAAGAAATTCTCAAATGCTAAATCAATTTCTTCCTCTCAATTTTTTGGAGATCCAAACAAAGATGCAAATGATTCAAAAGTTATCCTCTCAAAATTTTCAGATTCAACTTCCATTTCTAGTGCCGATCTTTTTGGTAACTCTTCCAATGTTGATGTTGATGCTAATGACCTCCTTAACAGACTATCTTTCCGTGCTTATGAAGACATTTCTTCTCTCAGAAATATGGCTGGTGAGACTGGGAAGAAACTCAGTTTCTTGGCCTCCAATCTGATAACAGATATTCAGGATAGAACAATGTAA 1158 0.3929 MASDASYDKNNVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAAHRSLGVHVSFVRSTNLDMWSPEQLKTMSLGGNNRARNFFKQHGWTDGGKVEAKYTSRAAELYRQILSKEVAKSMTDKEVDSPSSPTASQFEQVVEELPQVKTNESPNESAYSHTTVSNTVRKPISAKKTKKTVGLGARKLTRKSCENLYEQKPEVPATAAKKHTLSGSSSTSRFEYIENDQSVDLNSKGKGRLVRHVSLPESSSVFVDFLMDSGSPKEFGSNSSKDTIQESNEARKKFSNAKSISSSQFFGDPNKDANDSKVILSKFSDSTSISSADLFGNSSNVDVDANDLLNRLSFRAYEDISSLRNMAGETGKKLSFLASNLITDIQDRTM 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2342g00026 385 CDD ArfGap_ArfGap2_3_like 8 123 - -
Vium2342g00026 385 SUPERFAMILY ArfGap/RecO-like zinc finger 10 125 IPR037278 -
Vium2342g00026 385 Gene3D Arf GTPase activating protein 1 141 IPR038508 -
Vium2342g00026 385 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 5 384 - -
Vium2342g00026 385 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 1 138 - -
Vium2342g00026 385 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Vium2342g00026 385 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Vium2342g00026 385 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Vium2342g00026 385 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Vium2342g00026 385 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Vium2342g00026 385 MobiDBLite consensus disorder prediction 268 290 - -
Vium2342g00026 385 Pfam Putative GTPase activating protein for Arf 11 106 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2342g00026 Vium-Chr2342 135215 138531 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2342g00026 13 91 C2H2 Transcription Factor Family AT4G21160 43.750 3.65e-19 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2342g00026 K12493 K11855 gmx:100789796 510.76