Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2342g00025 ATGAATCTCTGGACGGACGATAACTCTTCTGTTATGGAGGCTTTCATGTCCTCCTCCGATCTCTCCTCCATATGGCCTCCGCCGGCGCCGCCGCAATCCGCCGCCGTCTTCAACCAGGACACCCTCCAGCACCGCCTACAGGCCCTCATCGAGGGCGCCAGAGAGAGCTGGACCTACGCTATCTTTTGGCAGTCCTCCTACGACTATTCCGGCTCCACGCTCCTTGGCTGGGGCGACGGTTACTACAAAGGCGACGATGACAAGGCCAAGGCCAAGGCCAAAGCTAAAGCCACCTCCGCCGCCGAGCAGGACCACCGCAAGAAGGTCCTCCGGGAGCTCAACTCCCTCATCTCTGGCTCTTCAGCTACCGCCTCCGATGACGTAGACGAGGAGGTCACAGACACCGAGTGGTTCTTCCTTGTTTCCATGACCCAGTCCTTCGTCAACGGCGCCGGCTTGCCCGGCCAGGCCTTCTTCAATTCCAACCCCGTCTGGGTCACCGGTGGCGACCGCCTCTCCTCCTCCCCCTGCGAGAGAGCCCGCCAGGGACAAGTCTTCGGCCTCCAAACCCTAGTCTGCATACCCTCCGCAAACGGAGTCGTTGAACTGGGGTCTACCGAATTAATTTACCAGAACCCGGATCTGATGAACAAGGTGAAGGTCCTCTTCAATTTTAGCAACAACAACTTCGACATGGGTTCTTCTTGGCCTGCAACCAGCGCCGATCAAGGAGAAAACGACCCCTCCACGCTCTGGCTCAACGATCCTGAAGTTAGGGATTCCATTAACACTGTCGCAGCTACTCCTTCTGTATCCGTTTCTGTTCCCCCTCATAACAGTACTCACGGGATTTCAAAGACGATGCAGTTGGAGAGTTCTATTCAAACCCCCGGTTCCAGTACCTTAACTGAAACCCCAAGCTCTATCCACGCTGTTCCACAGAACCAGAGCGTGTTCTCCAGAGAATTGAACTTCTCTGAGTACGGTTTTGATCCCAAGAGTGGCAACACTAACAATCAGCATTCCCTGAAGCCCGAATCCTGCGAGATTCTCAGCTTCAGCGATAGCAAGAGAACCTCTTACGGGGGCGGGGGCGGGGCCGGGGCCGTCAATGGTAATTCCAATTCCAATTCAAATTTCTTCTCTGGTCAATCACCGTTTGTTGCTGTTGCGGATGAGAACAACAATAACAACAACGGGAAGAGAAGGTCACCGAATTCGCGAGGCAGCAACGACGACGGAATGCTTTCGTTCACCTCCCGCGCGATTCTTCCGGCCACTAATTTGAAGTCTGCCGGTGGCGGCGATTCCGACCACTCGGATCTGGAAGCGTCGGTGGTAAAGGACCCTGTGGTGGAGCCGGAGAAGCGGCCCCGGAAGAGAGGGCGGAAGCCGGCGAACGGAAGAGAGGAACCGTTAAACCACGTGGAAGCGGAGAGGCAGAGGAGGGAGAAGCTGAATCAGAGGTTCTACGCGCTTCGTGCTGTGGTTCCCAACGTGTCCAAGATGGACAAAGCGTCGCTTCTGGGTGACGCAATATCTTACATTACGGAGCTGAAGTCCAAGCTTCAAACTCTGGAATCAGATAAAGATGGGTTGCAGAAACAACTTGAAGGAGTGCAGAAGGAACTCGAGAAATCAAGTGATAACTCTAATCACATGAAACACGCGGGTAATAGTAACATTAAGTCGGCTAATCAGGCGTTGATTGACTTGGACATCGACGTGAAGATTATTGGGTGGGACGCGATGATAAGAATCCAATGCAGCAAGAAGAACCACCCCGCGGCGAGGTTGATGGCGGCGCTGATGGAGTTGGACTTGGACGTTCACCACGCCAGCGTGTCGGTGGTTAACGATTTGATGATTCAACAAGCGACGGTGAAGATGGGGAGTAGGTTTTACACGCAGGAGCAGCTTCGTTTGGCCCTGTCGGCTAAGGTTGGGGATGTACGATGA 1959 0.5442 MNLWTDDNSSVMEAFMSSSDLSSIWPPPAPPQSAAVFNQDTLQHRLQALIEGARESWTYAIFWQSSYDYSGSTLLGWGDGYYKGDDDKAKAKAKAKATSAAEQDHRKKVLRELNSLISGSSATASDDVDEEVTDTEWFFLVSMTQSFVNGAGLPGQAFFNSNPVWVTGGDRLSSSPCERARQGQVFGLQTLVCIPSANGVVELGSTELIYQNPDLMNKVKVLFNFSNNNFDMGSSWPATSADQGENDPSTLWLNDPEVRDSINTVAATPSVSVSVPPHNSTHGISKTMQLESSIQTPGSSTLTETPSSIHAVPQNQSVFSRELNFSEYGFDPKSGNTNNQHSLKPESCEILSFSDSKRTSYGGGGGAGAVNGNSNSNSNFFSGQSPFVAVADENNNNNNGKRRSPNSRGSNDDGMLSFTSRAILPATNLKSAGGGDSDHSDLEASVVKDPVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYITELKSKLQTLESDKDGLQKQLEGVQKELEKSSDNSNHMKHAGNSNIKSANQALIDLDIDVKIIGWDAMIRIQCSKKNHPAARLMAALMELDLDVHHASVSVVNDLMIQQATVKMGSRFYTQEQLRLALSAKVGDVR 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2342g00025 652 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 42 223 IPR025610 -
Vium2342g00025 652 PANTHER MYC 12 647 IPR045084 GO:0003700|GO:0006355
Vium2342g00025 652 MobiDBLite consensus disorder prediction 441 480 - -
Vium2342g00025 652 CDD bHLH_AtAIB_like 467 543 - -
Vium2342g00025 652 Coils Coil 516 550 - -
Vium2342g00025 652 Gene3D - 462 551 IPR036638 GO:0046983
Vium2342g00025 652 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 470 519 IPR011598 GO:0046983
Vium2342g00025 652 SMART finulus 476 525 IPR011598 GO:0046983
Vium2342g00025 652 FunFam Transcription factor bHLH13 463 537 - -
Vium2342g00025 652 Pfam Helix-loop-helix DNA-binding domain 474 519 IPR011598 GO:0046983
Vium2342g00025 652 MobiDBLite consensus disorder prediction 390 416 - -
Vium2342g00025 652 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 473 540 IPR036638 GO:0046983
Vium2342g00025 652 MobiDBLite consensus disorder prediction 428 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2342g00025 Vium-Chr2342 118932 121535 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2342g00025 1 649 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 54.612 0.0 635
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium2342g00025 bHLH-MYC_N 4.1e-56 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2342g00025 K13422 - gmx:100790168 1011.52