Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2342g00009 ATGGGAGATGTGGCAAAGGACCTAACTGCTGGGACTATTGGGGGGGTGGCGCAATTAATAGTTGGCCACCCATTTGACACCATCAAGGTCAAGCTCCAAAGCCAGCCTACACCCCTCCCGGGCCAGCTTCCCAGGTATTCTGGTGCAATTGATGCTGTCAAACAGACAGTGGCAGCTGAAGGTCCAAGGGGTTTATACAAGGGTATGGGTGCCCCACTTGCCACAGTAGCAGCATTCAATGCTGTTCTGTTTTCAGTTAGGGGGCAAATGGAAGCATTACTGAGGTCGCATCCTGGTGCTACTCTCACAGTAAATCAGCAGGTTGTCTGTGGAGCTGGAGCTGGAATTGCCGTTTCGTTTCTAGCTTGCCCTACTGAATTGATCAAATGCAGATTGCAAGCACAAAGTGTATTAGCTGGCAGTGGAGCAGCTACCGTGGCAGTGAAATATGGGGGACCCATGGATGTAGCCAGGCAAGTTCTCAGGTCAGAAGGGGGCGTAAGAGGTCTGTTCAAGGGCATGGTTCCCACTATGGCTCGTGAAGTACCTGGAAATGCTGCATTGTTTGGTGTATATGAAGCACTAAAGCAATTACTTGCTGGTGGCACTGATACTTCGGGACTGGATAGAGGTTCTCTGTTGCTTGCTGGAGGCTTGGCTGGAGCTGCGTACTGGCTCGCAGTTTACCCAACTGATGTTGTCAAGAGTGTGATTCAAATAGATGATTACAAAAACCCGAAGTTCTCTGGTTCAATTGATGCTTTCAGAAGAATTTCAGCTACTGAGGGGTTCAAAGGCCTATATAAGGGTTTTGGTCCAGCAATGGCCCGAAGTGTTCCTGCTAATGCAGCTTGCTTCTTGGCATATGAGATGACAAGATCAGCTCTTGCATGA 894 0.4922 MGDVAKDLTAGTIGGVAQLIVGHPFDTIKVKLQSQPTPLPGQLPRYSGAIDAVKQTVAAEGPRGLYKGMGAPLATVAAFNAVLFSVRGQMEALLRSHPGATLTVNQQVVCGAGAGIAVSFLACPTELIKCRLQAQSVLAGSGAATVAVKYGGPMDVARQVLRSEGGVRGLFKGMVPTMAREVPGNAALFGVYEALKQLLAGGTDTSGLDRGSLLLAGGLAGAAYWLAVYPTDVVKSVIQIDDYKNPKFSGSIDAFRRISATEGFKGLYKGFGPAMARSVPANAACFLAYEMTRSALA 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2342g00009 297 Pfam Mitochondrial carrier protein 4 95 IPR018108 -
Vium2342g00009 297 Pfam Mitochondrial carrier protein 102 200 IPR018108 -
Vium2342g00009 297 Pfam Mitochondrial carrier protein 214 296 IPR018108 -
Vium2342g00009 297 SUPERFAMILY Mitochondrial carrier 3 290 IPR023395 -
Vium2342g00009 297 FunFam mitochondrial carnitine/acylcarnitine carrier-like protein 2 296 - -
Vium2342g00009 297 ProSiteProfiles Solute carrier (Solcar) repeat profile. 102 198 IPR018108 -
Vium2342g00009 297 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 4 296 - -
Vium2342g00009 297 ProSiteProfiles Solute carrier (Solcar) repeat profile. 2 93 IPR018108 -
Vium2342g00009 297 ProSiteProfiles Solute carrier (Solcar) repeat profile. 208 295 IPR018108 -
Vium2342g00009 297 Gene3D Mitochondrial carrier domain 2 297 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2342g00009 Vium-Chr2342 29813 33544 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2342g00009 22 291 Antiporters AT1G79900 33.935 7.47e-41 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2342g00009 K15109 - gmx:100787332 530.406