Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2341g00034 ATGGAAATTCAATTCCAACAACCAAACCTGCAGCATCAGAAATCAGGCATTGCGGTCACCAGAGGAGGAAAGTTGAAAGGGCGAAGCAGAAGCAACAACACCAACAAATTTGTTGGGGTGAGACAAAGGCCTTCGGGGAGATGGGTGGCTGAGATCAAAGACACAACTCAGAAGATAAGAATGTGGCTTGGCACATTTGAAACAGCTGAGGAAGCAGCCAGAGCCTATGATGAAGCTGCATGCCTTCTTCGTGGATCAAACACTCGCACCAACTTCATCACTCATGTGTCCTTGGATTCCCCTCTTGCTTCTCGAATTCGGAATCTTCTTAACAACAAAAAAGGGATAAAGAAACAGGAAGATGCTAATGTTATTGCTAATGCTAATAATGCAGCAGTTCCAAGAGTAAGCAGCACTGGCACTGCTAGTACTACTACCACTACTACTACTACTACAACTACTACTAGTACTCATTGTAATTCAAACAATGGCAATGGCAACAATGAGAAGTATCTTTCTACCATGACACCTCAAAGTTCAAATCTGTTTGATGATGCTTATAAACCAGATTTGAGCAATTGCAGGGAGGATTTTGGGTCAGGTCATCAATCCAATACTTCATGGGGTTTTGGACCTGTCTTTGATCGTTTTCCCATTGCTCAAATATTGGATGTACCGAAGATTGATGATTGTCTCACTGATGCAGCTGACTTGGAGCTTTGTGAATTTGAAAGAATGAAAGTTGAAAGACAGATATCAGCTTCACTCTATGCAATTAACGGGGTGCAAGAGTACATGGAAACTGTTCAGGACTCCAGTGAAACTCTCTGGGATCTTCCACCTTTATGCTCATTGTTCTGCTAA 864 0.4236 MEIQFQQPNLQHQKSGIAVTRGGKLKGRSRSNNTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSLDSPLASRIRNLLNNKKGIKKQEDANVIANANNAAVPRVSSTGTASTTTTTTTTTTTTSTHCNSNNGNGNNEKYLSTMTPQSSNLFDDAYKPDLSNCREDFGSGHQSNTSWGFGPVFDRFPIAQILDVPKIDDCLTDAADLELCEFERMKVERQISASLYAINGVQEYMETVQDSSETLWDLPPLCSLFC 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2341g00034 287 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Vium2341g00034 287 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Vium2341g00034 287 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Vium2341g00034 287 FunFam ethylene-responsive transcription factor RAP2-11 35 94 - -
Vium2341g00034 287 Pfam AP2 domain 36 85 IPR001471 GO:0003700|GO:0006355
Vium2341g00034 287 MobiDBLite consensus disorder prediction 136 168 - -
Vium2341g00034 287 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 28 253 - -
Vium2341g00034 287 SUPERFAMILY DNA-binding domain 36 93 IPR016177 GO:0003677
Vium2341g00034 287 Gene3D AP2/ERF domain 35 94 IPR036955 GO:0003700|GO:0006355
Vium2341g00034 287 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Vium2341g00034 287 CDD AP2 36 92 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2341g00034 Vium-Chr2341 311017 312408 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2341g00034 10 287 AP2-EREBP Transcription Factor Family AT5G19790 40.278 1.87e-52 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium2341g00034 AP2 6.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2341g00034 K09286 - gmx:100796898 447.973