Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2341g00012 ATGCCAGAGTTGAGAAGTGGAGCTAGAAGGTCGAAAAGGCTTGGAGATCTTCAGACTGGTCCACTACCTGTTGAGCAAGGAGAGAATTGGGCACAACCTGCTCAGAATCGAACTAGGAGGAGAGTTGGAGGTGGAAGAGGAAGAGGTGGTAATGCCACAGCTGTAGGCAAAGGGCCTTCACCAGCTGTACCCACAAGGCGAACTGCAGCTGGTAGAGGCCGTGGAGCAAGATTGATTGATCTGGACCCTGAACCTTGTGAAGTTTTACCTGAACCCGTTGCTTTAGGGGCTCCAGAACCCATTTACAATCACGTAGAGGTAGTGGCCAATAATAACATTGCGATGGAGGGTGGAAGTGCAGATAAGGTGGCTGTAGCTGAGGAAGAACCCAGCACAACTCCTGTCCCTGAGAGGGTACAAGTTGGTAACTCTCCTATATATAAGATAGAAAGGAAATTGGGTAAGGGTGGTTTTGGTCAAGTTTATGTTGGTCGAAGGGTAACTGGTGGTGGCTCTGATCGAACAGGTCCTGATGCGGTTGAGGTTGCACTTAAGTTTGAGCACAGAAACAGTAAAGGTTGCAATTATGGACCTCCTTATGAGTGGCAAGTTTACAGTACTCTGAATGGCTGTTATGGAATTCCCTGGGTTCATTACAAGGGCCGACAAGGAGATTTCTATATTTTGGTCATGGACATGCTTGGGCCCAGTCTTTGGGATGTATGGAATTCTCTTGGCCAATCAATGTCTCCGAGTATGGCTGCATGCATTGCAGTAGAGGCTATATCAATTCTTGAGAAGCTCCACTTGAAAGGGTTTGTTCATGGGGATGTGAAACCAGAAAACTTTCTGCTTGGCCAGCCCGGATCTGCTGATGATAAGAAACTATATCTTATTGATCTTGGTCTAGCTTCTAGATGGAAGGATGCATCGTCTGGTCTACATGTTGATTATGACCAGAGACCTGATATTTTCAGGGGAACGATAAGGTATGCTAGTGTACACGCTCATTTGGGTAGAACTGGAAGTCGAAGAGATGATCTCGAGTCTCTTGCATACACCCTAATATTTCTCATTAAAGGGAGATTACCATGGCAGGGTTATCAGGGTGACAATAAAAGCTTTCTTGTTTGTAAGAAAAAGATGGCCACTTCCCCGGAGTTGATGTGTTGCTTCTGTCCTGCACCATTTAAGCAGTTTCTTGAAGCTGTTACTAATATGAGATTTGATGAGGAGCCAAATTATTCCAAGCTTATATCATTTTTTGAAAGCTTGATTGAACCATGCACTCCATTGAGACCTATCAGAATAGATGGAGCTTTAAAGGTTGGTCAGAAAAGAGGTAGGATGCTTATAAATCTTGAAGAAGATGAACAACCTAAGAAGAAAGTTCGATTGGGGAGTCCTGCTACTCAATGGATATCAGTGTATAATGCACGTCGTCCCATGAAGCAGAGATATCACTATAATGTTGCAGACACTAGGCTCCGACAACATGTCGACAAGGGTATTGAGGATGGGTTGTATATAAGCTGTGTAGCCTCTGCAGCAAATTTATGGGCACTAATCATGGATGCAGGAACGGGTTTTTCTTCACAAGTTTATGAGTTATCTCTGGCCTTCCTGCACAAGGATTGGATAATGGAGCAATGGGAGAAAAATTACTACATCAGTGCAATCGCTGGTGCAGTTAATGGGAGTTCCTTGGTTGTCATGTCCAAAGGAACTCCTTATACGCAGCAGTCATACAAAGTCAGTGAATCATTTCCTTTCAAATGGATAAACAAGAAGTGGAAAGAAGGATTCCATGTTACCTCAATGACTACTGCTGGCAGCCGCTGGGGTGTTGTCATGTCCAGGAATTCTGGGTATTCTGATCAGGTTGTGGAGATTGACTTTTTGTATCCAAGTGAAGGAATCCATCGTCGATGGGAGAATGGTTATCGGATTACTTCTATGGCTGCTACCAGTGACCAGGCAGCCTTCATACTGAGCATACCAAAGCGGAAATTGCTTGATGAAACTCAGGAGACGCTTCGTACATCTGCTTTTCCTAGTACCCATGTTAAGGAAAAATGGGCCAAGAATCTCTACATTGCCTCTATATGTTATGGGCGAACTGTTTGCTAG 2130 0.4441 MPELRSGARRSKRLGDLQTGPLPVEQGENWAQPAQNRTRRRVGGGRGRGGNATAVGKGPSPAVPTRRTAAGRGRGARLIDLDPEPCEVLPEPVALGAPEPIYNHVEVVANNNIAMEGGSADKVAVAEEEPSTTPVPERVQVGNSPIYKIERKLGKGGFGQVYVGRRVTGGGSDRTGPDAVEVALKFEHRNSKGCNYGPPYEWQVYSTLNGCYGIPWVHYKGRQGDFYILVMDMLGPSLWDVWNSLGQSMSPSMAACIAVEAISILEKLHLKGFVHGDVKPENFLLGQPGSADDKKLYLIDLGLASRWKDASSGLHVDYDQRPDIFRGTIRYASVHAHLGRTGSRRDDLESLAYTLIFLIKGRLPWQGYQGDNKSFLVCKKKMATSPELMCCFCPAPFKQFLEAVTNMRFDEEPNYSKLISFFESLIEPCTPLRPIRIDGALKVGQKRGRMLINLEEDEQPKKKVRLGSPATQWISVYNARRPMKQRYHYNVADTRLRQHVDKGIEDGLYISCVASAANLWALIMDAGTGFSSQVYELSLAFLHKDWIMEQWEKNYYISAIAGAVNGSSLVVMSKGTPYTQQSYKVSESFPFKWINKKWKEGFHVTSMTTAGSRWGVVMSRNSGYSDQVVEIDFLYPSEGIHRRWENGYRITSMAATSDQAAFILSIPKRKLLDETQETLRTSAFPSTHVKEKWAKNLYIASICYGRTVC 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2341g00012 709 ProSitePatterns Protein kinases ATP-binding region signature. 153 185 IPR017441 GO:0005524
Vium2341g00012 709 ProSitePatterns Serine/Threonine protein kinases active-site signature. 273 285 IPR008271 GO:0004672|GO:0006468
Vium2341g00012 709 MobiDBLite consensus disorder prediction 1 73 - -
Vium2341g00012 709 Pfam Protein kinase domain 147 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2341g00012 709 SMART serkin_6 147 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2341g00012 709 CDD STKc_CK1 147 422 - -
Vium2341g00012 709 Gene3D Transferase(Phosphotransferase) domain 1 112 465 - -
Vium2341g00012 709 ProSiteProfiles Protein kinase domain profile. 147 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2341g00012 709 SUPERFAMILY Protein kinase-like (PK-like) 147 436 IPR011009 -
Vium2341g00012 709 PANTHER CASEIN KINASE-RELATED 147 673 - -
Vium2341g00012 709 FunFam Casein kinase 1-like protein 119 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2341g00012 Vium-Chr2341 92822 99731 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2341g00012 121 308 EF-hand Containing Proteins AT5G66210 27.586 6.18e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Vium2341g00012 Pkinase 1.8e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2341g00012 - - gmx:100801967 1375.15