Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2341g00001 ATGAACATGAATATGTGCCAAAGTGTATCAGTTACCACTGAATGCCACCAAGAGCAGGTTTTTGCCCCTTCTTGCTCAAGCAGCCTTGATGACCTCTTCTCTGCTCAGAACACGGAAGTGGATGTCGAGTTGGAGTGGCTTTCGGAGTTTGTGGAGGACTGCTTTTCGAGTCCCCCAAGTTTTGTGTTGGGAGGCGGTGGGGCTAAGAGTAATACAAGCATAATAAGCATAAGCACAGGCGGCAGCAGCAGCAGCAGCAGCAAGGGTTGTTCTTCAGGCACATTGAAGAGAGCCCAAGAGAATGAGTGTCCTTTGCAGAATTTTGCCGTGCCTGGGAAGGCGAGGAGCAAAAGGAAAAGGCTTTCGGCCCCTAGAACGAAGGACCCTTTGAGCATATGGTCACAGCATTTGAACCCCCAAAACGAAGCCTTGAGTTCTGACCCTCAACTCCTGAAACAGGCTTATTGGTTGGCCGACAGTGAACTGATGATGATGCCAAAGCCAAAGGAGGAGCAAGAAGTGAGGAAAGTGGTGATTGGGGAGTGTGAGGTTGAAGGTAGCAGTGGTCAACAAGCAATGGCAAGGAGATGCAGCCATTGCTTGGCTCAGAGGACCCCACAGTGGAGGGCAGGACCATTAGGTCCAAAGACACTTTGCAATGCATGTGGAGTTAGGTACAAGTCTGGTAGGTTACTACCAGAGTATAGGCCAGCCAAGAGTCCTACTTTTGTTAGCTACTTGCACTCCAATTCCCACAAGAAAGTCATGGAGATGCGGATGTCTGTTTACTCTTCCATTTCTTCTGACCTTTAG 813 0.4932 MNMNMCQSVSVTTECHQEQVFAPSCSSSLDDLFSAQNTEVDVELEWLSEFVEDCFSSPPSFVLGGGGAKSNTSIISISTGGSSSSSSKGCSSGTLKRAQENECPLQNFAVPGKARSKRKRLSAPRTKDPLSIWSQHLNPQNEALSSDPQLLKQAYWLADSELMMMPKPKEEQEVRKVVIGECEVEGSSGQQAMARRCSHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMSVYSSISSDL 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2341g00001 270 ProSiteProfiles GATA-type zinc finger domain profile. 191 227 IPR000679 GO:0006355|GO:0043565
Vium2341g00001 270 SMART GATA_3 191 245 IPR000679 GO:0006355|GO:0043565
Vium2341g00001 270 ProSitePatterns GATA-type zinc finger domain. 197 222 IPR000679 GO:0006355|GO:0043565
Vium2341g00001 270 Pfam GATA zinc finger 197 231 IPR000679 GO:0006355|GO:0043565
Vium2341g00001 270 CDD ZnF_GATA 196 243 IPR000679 GO:0006355|GO:0043565
Vium2341g00001 270 PANTHER GATA TRANSCRIPTION FACTOR 23 261 - -
Vium2341g00001 270 FunFam GATA transcription factor 187 269 - -
Vium2341g00001 270 Gene3D - 187 259 IPR013088 GO:0006355|GO:0008270
Vium2341g00001 270 MobiDBLite consensus disorder prediction 106 131 - -
Vium2341g00001 270 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 193 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2341g00001 Vium-Chr2341 12854 14157 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2341g00001 42 259 C2C2-Gata Transcription Factor Family AT4G32890 40.359 3.56e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vium2341g00001 GATA 6.9e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2341g00001 - - gmx:100786479 392.889