Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2337g00007 ATGGCAGCTGCAACATCTGGTGCTGTGTTAAATGGGTTGGGATCTTCCTTCTTGAGTGGAGGAAGCAGGAGCCAAACCCTTCTGGCCACTTCCATTGGAGGCAAAGTCGGTGTTGCAGTTAGTCCTAGAAGACTCATTGTGGTAGCTGCAGCAGCACCAAAGAAGTCATGGCTCCCTGGTGTTAGAGCTGGTGGCAATCTCGTCGACCCAGAATGGCTTGATGGATCGCTACCAGGTGACTTTGGTTTTGACCCACTAGGCCTGGGGAAGGACCCGGCATTCCTGAAATGGTACAGAGAAGCTGAGCTGATTCATGGGAGGTGGGCAATGGCTGCAGTTTTAGGTATCTTTGTAGGGCAGGCCTGGAGTGGAGTGCCATGGTTTGAGGCTGGAGCTGACCCCAATGCAATTGCTCCTTTTTCCTTTGGTTCTCTTTTGGGAACCCAGTTGATTCTTATGGGATGGGTTGAGAGCAAGAGATGGGTGGATTTCTTCAACCCAGACTCACAGTCAGTGGAATGGGCCACTCCATGGTCAAAAACTGCTGAGAACTTTGCCAATGCTACTGGTGAACAAGGGTACCCAGGAGGCAAATTCTTTGACCCTTTGGGCTTCGCTGGCACTCTCAAGGATGGAGTTTACATCCCGGATACAGAGAAGCTGGAAAGATTGAAATTAGCTGAGATTAAGCATGCCAGGATTGCTATGTTGGCCATGCTGATTTTCTACTTTGAGGCTGGACAAGGAAAGACCCCCCTGGGCGCACTTGGCTTGTAA 777 0.5058 MAAATSGAVLNGLGSSFLSGGSRSQTLLATSIGGKVGVAVSPRRLIVVAAAAPKKSWLPGVRAGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVPWFEAGADPNAIAPFSFGSLLGTQLILMGWVESKRWVDFFNPDSQSVEWATPWSKTAENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYFEAGQGKTPLGALGL 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2337g00007 258 Gene3D Chlorophyll a/b binding protein domain 70 257 - -
Vium2337g00007 258 Pfam Chlorophyll A-B binding protein 70 246 IPR022796 -
Vium2337g00007 258 SUPERFAMILY Chlorophyll a-b binding protein 67 258 - -
Vium2337g00007 258 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 54 256 IPR001344 GO:0009765|GO:0016020
Vium2337g00007 258 FunFam Chlorophyll a-b binding protein, chloroplastic 70 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2337g00007 Vium-Chr2337 24898 26285 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2337g00007 1 258 Chloroplast and Mitochondria Gene Families AT1G15820 81.923 7.07e-153 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2337g00007 K08917 - gmx:100527463 498.819