Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2337g00002 ATGGATGTTCTAACAATAGCCTCAACTCTCACCATTTCCAAACCCTTTCAAACGCTTTCACTCCCAAAGATACACCACGCACCACCTCCTCCTCCCACGCGCTTCTCGGTTTCATGCAGAGCCACGAAGCAGCAGCTTCGAGGTGTGGAAGACAACCTGTACAAGATTCTAAGTTTGAGTCCCAACAGCGCCACCACCGACGACATAAAGAAAGCGTACAGATCAATGGCTCGTCAGTACCACCCCGACGTGTGCCATGATAGTTCCAGGAAAGAGGAGTTGACGAGGATGTTTGTGCAACTGAACGCGGCTTACACCACCTTGTCCAATCCAAGGCTTCGAGCAGAGTATGACTACGAACTGGGTTTGAGAAGCAGAATGGGCGTTGGTGACGAGAGTTGGAGAATGAGATGGGTGGAACAACTCGCCGAGTTGAAGAGAAGATCTCACGATCGTATGCAACGAAATCGTGGATCGTGGAGCACCAGAGTCAGAGCACAAACCGTGAACTCAAATTAG 519 0.5029 MDVLTIASTLTISKPFQTLSLPKIHHAPPPPPTRFSVSCRATKQQLRGVEDNLYKILSLSPNSATTDDIKKAYRSMARQYHPDVCHDSSRKEELTRMFVQLNAAYTTLSNPRLRAEYDYELGLRSRMGVGDESWRMRWVEQLAELKRRSHDRMQRNRGSWSTRVRAQTVNSN 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2337g00002 172 PRINTS DnaJ domain signature 93 113 IPR001623 -
Vium2337g00002 172 PRINTS DnaJ domain signature 55 73 IPR001623 -
Vium2337g00002 172 PRINTS DnaJ domain signature 73 88 IPR001623 -
Vium2337g00002 172 Gene3D DnaJ domain 38 168 IPR036869 -
Vium2337g00002 172 ProSiteProfiles dnaJ domain profile. 52 121 IPR001623 -
Vium2337g00002 172 SUPERFAMILY Chaperone J-domain 46 117 IPR036869 -
Vium2337g00002 172 CDD DnaJ 52 110 IPR001623 -
Vium2337g00002 172 MobiDBLite consensus disorder prediction 153 172 - -
Vium2337g00002 172 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 39 169 - -
Vium2337g00002 172 SMART dnaj_3 51 113 IPR001623 -
Vium2337g00002 172 Pfam DnaJ domain 52 118 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2337g00002 Vium-Chr2337 7846 8618 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2337g00002 54 118 C2H2 Transcription Factor Family AT1G74250 38.806 6.38e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2337g00002 - - gmx:100783590 227.254