Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2337g00001 ATGGATGTTCTCAGATTCACCTCAAACCTTAGCACCACTCACATGCTTCCACTCTCCAAAAGACATCAAACACAACATCCTCGTATGAAGTTTTCCGTTTCATGCAGAGCCACGAAACAGCAGACGTGTGTGGAGGAGAACTTGTACAAGGTACTAAGTTTGAGTCCCATGAGTGCGACCACAGATGACATAAAGAAAGCGTACAGATCAATGGCTCTTCAGTTCCACCCCGACGTGTGCCATGACGGTTCCAAGAAAGAAGAGTTGACGAGGATGTTTGTGCAGCTCAACGCCGCCTACACCACCTTGTCCAACCCACAGCTTCGAGCGGATTATGATTATGAGTTGGGTTTGAGAAACAAGAAAAGTGTGGGTGATGAGAGCTGGAGATGTAGGTGGCAGGAGCAGGTGGTTGGGTTGAAGAGAAGGTCTCACACGCGT 441 0.4853 MDVLRFTSNLSTTHMLPLSKRHQTQHPRMKFSVSCRATKQQTCVEENLYKVLSLSPMSATTDDIKKAYRSMALQFHPDVCHDGSKKEELTRMFVQLNAAYTTLSNPQLRADYDYELGLRNKKSVGDESWRCRWQEQVVGLKRRSHTR 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2337g00001 147 CDD DnaJ 47 105 IPR001623 -
Vium2337g00001 147 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 19 147 - -
Vium2337g00001 147 SMART dnaj_3 46 108 IPR001623 -
Vium2337g00001 147 Gene3D DnaJ domain 33 137 IPR036869 -
Vium2337g00001 147 PRINTS DnaJ domain signature 88 108 IPR001623 -
Vium2337g00001 147 PRINTS DnaJ domain signature 50 68 IPR001623 -
Vium2337g00001 147 PRINTS DnaJ domain signature 68 83 IPR001623 -
Vium2337g00001 147 PRINTS DnaJ domain signature 141 147 IPR001623 -
Vium2337g00001 147 SUPERFAMILY Chaperone J-domain 41 112 IPR036869 -
Vium2337g00001 147 ProSiteProfiles dnaJ domain profile. 47 116 IPR001623 -
Vium2337g00001 147 Pfam DnaJ domain 47 113 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2337g00001 Vium-Chr2337 4 501 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2337g00001 49 113 C2H2 Transcription Factor Family AT1G74250 43.284 1.17e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2337g00001 - - vum:124830030 303.523