Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2334g00002 ATGCTGTTTGGTGCGAGTGACAGCTATGATGGTGATAAGCTAATGCAGATCACACTGTTATTCAACCACTTTGGTAAGAGATTAGTTCAAAGAATGCCAAGATGCAGGTTTGGTTTTTTCCATGTGGTTAACAACGACTACACTCATTGGGAAATGTATGCCATTGGTGGTAGCAAGCATCCTACAATTATTAGTGAGGGCAACCGATTCACAGCCCCCAACGACAATAATGCTAAAGAGGTAACAAAGAGGACCTACGCAACAGAACAAGAGTGGAAAAACTGGCAATGGAGATCAATCAGGGATGAGCTAGTGAATGGAGCTTATTTCAGAGAAAGTGGGCCCGTTTTAAAGAACAGACCCTTCACAAAGAAGGACATGGTGTCCTCCAGGCCTGGTTCGTATGTAGTAAGGCTCAGTCGCTACGCTGGGGCCCTAAGATGCTTTGAGGGCAAACCTTGTTAG 465 0.4495 MLFGASDSYDGDKLMQITLLFNHFGKRLVQRMPRCRFGFFHVVNNDYTHWEMYAIGGSKHPTIISEGNRFTAPNDNNAKEVTKRTYATEQEWKNWQWRSIRDELVNGAYFRESGPVLKNRPFTKKDMVSSRPGSYVVRLSRYAGALRCFEGKPC 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2334g00002 154 PANTHER PECTATE LYASE 18-RELATED 1 152 IPR045032 GO:0030570
Vium2334g00002 154 SUPERFAMILY Pectin lyase-like 1 154 IPR011050 -
Vium2334g00002 154 Gene3D - 1 147 IPR012334 -
Vium2334g00002 154 SMART amb_all 1 76 IPR002022 -
Vium2334g00002 154 Pfam Pectate lyase 1 70 IPR002022 -
Vium2334g00002 154 PRINTS Pollen allergen Amb family signature 53 72 IPR018082 -
Vium2334g00002 154 PRINTS Pollen allergen Amb family signature 95 119 IPR018082 -
Vium2334g00002 154 PRINTS Pollen allergen Amb family signature 125 148 IPR018082 -
Vium2334g00002 154 PRINTS Pollen allergen Amb family signature 31 50 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2334g00002 Vium-Chr2334 23089 23697 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2334g00002 1 154 Polysaccharide Lyase AT4G13710 58.442 1.33e-60 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2334g00002 K01728 - vum:124830021 329.717