Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2334g00001 ATGGTGAATCCTGTTCCTGGTACCCTTAGGCATGCGGTTACAAGAACTGCACCCTTGTGGATCTATTTTTCTCATAGCATGACCATTAGGCTGAGCCAGGAGCTGATTGTGGCAAGTGACAAGACCATTGATGGAAGAGGAGCTGATATCTACATTATGAATGGTGCTGGTTTTACCCTCCAATTCGTCAAGAATGTCATCATCCATGGAATCAAAATTTTTGACATTAATTCTGGCAATGGTGGACTTATCAGAGATTCTGAGACCCACTACGGTCAAAGAACTCAGAGTGATGGTGATGGAATTTCCATCTTTGGCTCTAGCTATGTTTGGATCGACCATGTTTCCATGAGAAACTGCAAAGACGGAATGATCGATGCCATTATGGGTTCTACTGCCATTACCATATCCAATTGCCACTTCACGGACCACAATGAGGTGATGCTGTTTGGTGCGAGTGACAGCTATGATGGTGATAAGCTAATGCAGATCACACTGTTATTCAACCACTTTGGTAAGAGATTAGTTCAAAGAATGCCAAGATGCAGGTTTGGTTTTTTCCATGTGGTTAACAACGACTACACTCATTGGGAAATGTATGCCATTGGTGGTAGCAAGCATCCTACAATTATTAGTGAGGGCAACCGATTCACAGCCCCCAACGACAATAATGCTAAAGAGGTAACAAAGAGGACCTACGCAACAGAACAAGAGTGGAAAAACTGGCAATGGAGATCAATCAGGGATGAGCTAGTGAATGGAGCTTATTTCAGAGAAAGTGGGCCCGTTTTAAAGAACAGACCCTTCACAAAGAAGGACATGGTGTCCTCCAGGCCTGGTTCGTATGTAGTAAGGCTCAGTCGCTACGCTGGGGCCCTAAGATGCTTTGAGGGCAAACCTTGTTAG 906 0.4437 MVNPVPGTLRHAVTRTAPLWIYFSHSMTIRLSQELIVASDKTIDGRGADIYIMNGAGFTLQFVKNVIIHGIKIFDINSGNGGLIRDSETHYGQRTQSDGDGISIFGSSYVWIDHVSMRNCKDGMIDAIMGSTAITISNCHFTDHNEVMLFGASDSYDGDKLMQITLLFNHFGKRLVQRMPRCRFGFFHVVNNDYTHWEMYAIGGSKHPTIISEGNRFTAPNDNNAKEVTKRTYATEQEWKNWQWRSIRDELVNGAYFRESGPVLKNRPFTKKDMVSSRPGSYVVRLSRYAGALRCFEGKPC 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2334g00001 301 PANTHER PECTATE LYASE 18-RELATED 1 299 IPR045032 GO:0030570
Vium2334g00001 301 PRINTS Pollen allergen Amb family signature 242 266 IPR018082 -
Vium2334g00001 301 PRINTS Pollen allergen Amb family signature 200 219 IPR018082 -
Vium2334g00001 301 PRINTS Pollen allergen Amb family signature 272 295 IPR018082 -
Vium2334g00001 301 PRINTS Pollen allergen Amb family signature 34 50 IPR018082 -
Vium2334g00001 301 PRINTS Pollen allergen Amb family signature 98 119 IPR018082 -
Vium2334g00001 301 PRINTS Pollen allergen Amb family signature 178 197 IPR018082 -
Vium2334g00001 301 SUPERFAMILY Pectin lyase-like 2 292 IPR011050 -
Vium2334g00001 301 Gene3D - 1 294 IPR012334 -
Vium2334g00001 301 SMART amb_all 26 223 IPR002022 -
Vium2334g00001 301 Pfam Pectate lyase 35 217 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2334g00001 Vium-Chr2334 8 1214 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2334g00001 1 301 Polysaccharide Lyase AT1G14420 63.072 1.35e-139 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2334g00001 K01728 - gmx:100796307 516.924