Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2333g00003 ATGTTGCCCTGCGATTACTGTCACACCAAACCCGCCTTACTCTTCTGCCGACCCGACTCTGCCAAACTCTGTCTCCTCTGCGACCACCACGTCCACACCGCTAACGCTCTCTCCCTAAAGCACGTCCGCTTCCAGATTTGCGACACCTGCAACACCGACACCGCCACCGTCCGCTGCTCTGCCCACAATCTCATCCTCTGCCACGCCTGCGACCTCGACGCTCACGCCCACGCCCCGGCCTCCCTCCACCACCGCCACCGTCTCCTTGGCCTCTCTGGCTGCCCCTCCCTCCACCAGATTGCCACCGCCCTCGGCCTTGATCTCCGGCTGCGCCACGCCAACTGCCGCGACGAGGTCTACGAGCAGTTCCTCGAAGTCGCGCGCACGAGGAACGAGAACGAGTTTGCGCGTTCAGAGACTGAGGAATTCAGGTTGGAGTCTGAAAATGACGTCGTCGACGAGATGTTGCTGCAGCAGACGCCGTTTACGTCCTTGCTCGGGATGCCTGATTCCCAATCTGAATTCGATGCCGCCAAAACTAACGATAACGGTTACGGAGCCCAAGTTGGAGATCTTCTCTGGACTTTTGATCCCAACTATCAGCCTCCTCAGGTGTGGGATTTTGAATTACAGAAATCAAGAGGTTGTGATGAACCAGGAGTAGTGACATTTGATGGTCTAGAAGTTCCAAAATTATTTCAGGATGTGCACAATATGAATTACTCGACCACTGGTGATGATATTCTATCAAGAAATAACCAATCGGATCAGTCATCATCAAGCCACGCAAAGAAGAAAGAAGAAAGCAACAAGAAAGCCAGAGGTGGGTTATCATCAGAGTCCAAATTGCTAGAATCAATACCGTATAGTGACACCAACAATGTGGTAGTCATGGAGCATCTTGTGGGTGGGAATGCAAATGTTAGCACCTTAAAAGCCAGGGTTAGCGTGGAAGAGTTGGCTAAGAATAGAGGTAATGCAATGTTACGCTACAAGGAGAAGAAGAAATCTCGAAGGTATATTTCATTTTTTATATGA 1038 0.5116 MLPCDYCHTKPALLFCRPDSAKLCLLCDHHVHTANALSLKHVRFQICDTCNTDTATVRCSAHNLILCHACDLDAHAHAPASLHHRHRLLGLSGCPSLHQIATALGLDLRLRHANCRDEVYEQFLEVARTRNENEFARSETEEFRLESENDVVDEMLLQQTPFTSLLGMPDSQSEFDAAKTNDNGYGAQVGDLLWTFDPNYQPPQVWDFELQKSRGCDEPGVVTFDGLEVPKLFQDVHNMNYSTTGDDILSRNNQSDQSSSSHAKKKEESNKKARGGLSSESKLLESIPYSDTNNVVVMEHLVGGNANVSTLKARVSVEELAKNRGNAMLRYKEKKKSRRYISFFI 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2333g00003 345 MobiDBLite consensus disorder prediction 260 275 - -
Vium2333g00003 345 CDD Bbox1_BBX-like 3 46 - -
Vium2333g00003 345 ProSiteProfiles Zinc finger B-box type profile. 42 91 IPR000315 GO:0008270
Vium2333g00003 345 SMART bboxneu5 1 46 IPR000315 GO:0008270
Vium2333g00003 345 Coils Coil 126 146 - -
Vium2333g00003 345 MobiDBLite consensus disorder prediction 243 259 - -
Vium2333g00003 345 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 340 - -
Vium2333g00003 345 ProSiteProfiles Zinc finger B-box type profile. 1 46 IPR000315 GO:0008270
Vium2333g00003 345 MobiDBLite consensus disorder prediction 243 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2333g00003 Vium-Chr2333 27275 30697 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2333g00003 1 340 C2C2-CO-like Transcription Factor Family AT2G33500 31.771 3.13e-47 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2333g00003 - - vum:124830018 675.241