Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2330g00022 ATGGATTTAGAAGAGAAGTTCCTGGTTAAAGTTTCTGGTGTTCAAAGCCTTTCTTCCAGTGTGCAAAGTACTCCAGAAAAAAATGGCCATTCAGATGGTGCTTCAAAAAGTTCAGAACTCCTTCAACAGTTCCTAAAATGTGGTCTGAAGAAGGAACTTCTTCGAACGTCTTTTGATAAGGACAAAAAAAACATTTCAATTAAAAGCAGGATGACTGAAACTAAGTCAACTGGGAAGATGATTAAGAAACAAGACACAAAAAAGGTTTCTAGTTTCAGCCACCAGCCATCTAGAAAGCAGTCTCGGAAGGGTGAAAATCCCACTCGACTCATACCTCCTTCTGACCAGTCTTCTGATTTTGGCCATTCAAACACTTGGATCTGTAAAAATGCTGCTTGTAGGGCAGTTCTGTCTATAGATGACACATTCTGTAGAAGATGCTCTTGCTGTATTTGTCACCTTTTTGATGATAACAAGGATCCTAGTCTTTGGTTGGTATGCACATCTGAGTCTACTCAAGGGGACTCCTGTGGGTTGTCTTGCCATATTGAATGCGCCCTTCTACATAAGAAGGTGGGGGTTGTTGATCATGGGCAACTGATGCAACTAGATGGTGGTTATTGTTGTGCATCCTGTGGTAAAGTTACGGGGATACTCGGATGTTGGAAGAAGCAGCTAAATATTGCTAAGGATGCCCGACGTGTGGATGTACTCTGTTACAGGATATATTTGAGCTACAGGCTTCTGGATGGAACCACAAAATTCAAAGACTTGCATCAAACAGTACAAGAGGCGAAGGCTAAGCTGGAGACAGAAGTTGGCCCTGTGAATGGCGTTTCTGCCAAGATGGCTCGAGGCATTGTCAGCAGACTCCCTATTGCCAATGATATACAGAAACTCTGTTCACTTGCTATTGAGAAAGCTGATAGCTGGCTTGCCACTGTTCACAATGTAAATTCAGATTCTACAGGGGGTTCACTTCCTGCTGCTTGCAAGTTTGTTTTTGAAGAGGTAACAACTTCCTCCGTGAAAATCATTTTAATTGAATTATCAAATATATGTTCTGAGGAGATTAAGGGATACAAGCTTTGGTATTACACGAGTCGGGATGAATCACCCACCAAAGATCCTGTTTCCGTGTTTCCCAAAACTCAGAGGAGGATTTTGATATCCAACCTCAAGCCTTGCACAGAATATACTTTTCGGATTATATCTTACACAGATACATGTGACCTGGGTCATTCTGAGGCTAAGTGTTTTACCAAGAGCATCGAGGTAATTAAAAACAACCCCTCTCCATCTGTCGCTATGAATCATGAAAAAGAGAACCTTCTATCTAGGGGCAATTCTTCGGGATCCAAGATGGTGCCAAATGACGCAATGGGCAACTATGGATTCAAGGTTCGAGACCTTGGGAAAATTTTGCGTCTTGCTTGGGCTCAAGAACAAGGTTACTTGGAAGAGTTTTGTTGTGCCAATACGAAAAATTGCTGTGGTCAGAGTGAACGGTTAGATAAACCAAGAATTCCAGAGGCACAGTTGCCCTCAGTTTCTAGAGGCCTTGATTTGAATGTTGTTTCAGTTCCTGATTTAAATGAAGAGCTAACACCTCCTTTTGAGTATTCTAGGGATGAAGATAATGGTTGCTCTTTGTTGCAAACTGTGGAGGGGGACGATGATGCAGCTTCTCATGATCTAGAGAAAAATGGTTTAGCAAGATCACATGGGAGTGGGGATTCTCAAACCTGGACCCATGGGCCAGCAGGAGAAGTATCTGCTGTTGATTCACGCTTAGATATGTGCAGAAAAAGGTTAGCAAGCACAATGGAAGAGACACATGATTGTGACAGCACTTTAATTAACGGTTCTCCATTACGCATATGTGATGGTTCATGTTCCTTGGATGAGAACTTTGAGTATTGTGTGAAAGTAATTCGTTGGCTAGAATGTGAGGGTCACATTAAACAGGAATTTAGGTTGAAGTTGCTAACATGGTTTAGTTTAAGGGCGACAGAGCAAGAACGCAGGGTGGTTAATACCTTCATTCAGACTCTTATGGATGATCCGAGTAGTTTGGCAGGGCAACTGGTAGATTCTTTTTATGATATTATATCAAACAAGAGGCAAAAAAATGGATTCAGTATTAAAGCCGGGGCATCAAATTAA 2166 0.4178 MDLEEKFLVKVSGVQSLSSSVQSTPEKNGHSDGASKSSELLQQFLKCGLKKELLRTSFDKDKKNISIKSRMTETKSTGKMIKKQDTKKVSSFSHQPSRKQSRKGENPTRLIPPSDQSSDFGHSNTWICKNAACRAVLSIDDTFCRRCSCCICHLFDDNKDPSLWLVCTSESTQGDSCGLSCHIECALLHKKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLNIAKDARRVDVLCYRIYLSYRLLDGTTKFKDLHQTVQEAKAKLETEVGPVNGVSAKMARGIVSRLPIANDIQKLCSLAIEKADSWLATVHNVNSDSTGGSLPAACKFVFEEVTTSSVKIILIELSNICSEEIKGYKLWYYTSRDESPTKDPVSVFPKTQRRILISNLKPCTEYTFRIISYTDTCDLGHSEAKCFTKSIEVIKNNPSPSVAMNHEKENLLSRGNSSGSKMVPNDAMGNYGFKVRDLGKILRLAWAQEQGYLEEFCCANTKNCCGQSERLDKPRIPEAQLPSVSRGLDLNVVSVPDLNEELTPPFEYSRDEDNGCSLLQTVEGDDDAASHDLEKNGLARSHGSGDSQTWTHGPAGEVSAVDSRLDMCRKRLASTMEETHDCDSTLINGSPLRICDGSCSLDENFEYCVKVIRWLECEGHIKQEFRLKLLTWFSLRATEQERRVVNTFIQTLMDDPSSLAGQLVDSFYDIISNKRQKNGFSIKAGASN 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2330g00022 721 Pfam PHD - plant homeodomain finger protein 128 246 IPR032881 -
Vium2330g00022 721 MobiDBLite consensus disorder prediction 69 121 - -
Vium2330g00022 721 MobiDBLite consensus disorder prediction 69 89 - -
Vium2330g00022 721 CDD FN3 357 408 IPR003961 GO:0005515
Vium2330g00022 721 PANTHER VIN3-LIKE PROTEIN 2-RELATED 17 716 IPR044514 GO:0010048|GO:0040029
Vium2330g00022 721 MobiDBLite consensus disorder prediction 12 37 - -
Vium2330g00022 721 Gene3D Immunoglobulins 313 417 IPR013783 -
Vium2330g00022 721 MobiDBLite consensus disorder prediction 569 588 - -
Vium2330g00022 721 Pfam Fibronectin type III domain 333 409 IPR003961 GO:0005515
Vium2330g00022 721 SUPERFAMILY Fibronectin type III 332 408 IPR036116 GO:0005515
Vium2330g00022 721 ProSiteProfiles Fibronectin type-III domain profile. 327 426 IPR003961 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2330g00022 Vium-Chr2330 135096 143477 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2330g00022 124 712 PHD Gene Family AT3G24440 48.680 1.83e-177 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2330g00022 - - gmx:100816128 1322.38