Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2330g00020 ATGACTGAAACTAAGTCAACTGGGAAGATGATTAAGAAACAAGACACAAAAAAGGTTTCTAGTTTCAGCCACCAGCCATCTAGAAAGCAGTCTCGGAAGGGTGAAAATCCCACTCGACTCATACCTCCTTCTGACCAGTCTTCTGATTTTGGCCATTCAAACACTTGGATCTGTAAAAATGCTGCTTGTAGGGCAGTTCTGTCTATAGATGACACATTCTGTAGAAGATGCTCTTGCTGTATTTGTCACCTTTTTGATGATAACAAGGATCCTAGTCTTTGGTTGGTATGCACATCTGAGTCTACTCAAGGGGACTCCTGTGGGTTGTCTTGCCATATTGAATGCGCCCTTCTACATAAGAAGGTGGGGGTTGTTGATCATGGGCAACTGATGCAACTAGATGGTGGTTATTGTTGTGCATCCTGTGGTAAAGTTACGGGGATACTCGGATGTTGGAAGAAGCAGCTAAATATTGCTAAGGATGCCCGACGTGTGGATGTACTCTGTTACAGGATATATTTGAGCTACAGGCTTCTGGATGGAACCACAAAATTCAAAGACTTGCATCAAACAGTACAAGAGGCGAAGGCTAAGCTGGAGACAGAAGTTGGCCCTGTGAATGGCGTTTCTGCCAAGATGGCTCGAGGCATTGTCAGCAGACTCCCTATTGCCAATGATATACAGAAACTCTGTTCACTTGCTATTGAGAAAGCTGATAGCTGGCTTGCCACTGTTCACAATGTAAATTCAGATTCTACAGGGGGTTCACTTCCTGCTGCTTGCAAGTTTGTTTTTGAAGAGGTAACAACTTCCTCCGTGAAAATCATTTTAATTGAATTATCAAATATATGTTCTGAGGAGATTAAGGGATACAAGCTTTGGTATTACACGAGTCGGGATGAATCACCCACCAAAGATCCTGTTTCCGTGTTTCCCAAAACTCAGAGGAGGATTTTGATATCCAACCTCAAGCCTTGCACAGAATATACTTTTCGGATTATATCTTACACAGATACATGTGACCTGGGTCATTCTGAGGCTAAGTGTTTTACCAAGAGCATCGAGGTAATTAAAAACAACCCCTCTCCATCTGTCGCTATGAATCATGAAAAAGAGAACCTTCTATCTAGGGGCAATTCTTCGGGATCCAAGATGGTGCCAAATGACGCAATGGGCAACTATGGATTCAAGGTTCGAGACCTTGGGAAAATTTTGCGTCTTGCTTGGGCTCAAGAACAAGGTTACTTGGAAGAGTTTTGTTGTGCCAATACGAAAAATTGCTGTGGTCAGAGTGAACGGTTAGATAAACCAAGAATTCCAGAGGCACAGTTGCCCTCAGTTTCTAGAGGCCTTGATTTGAATGTTGTTTCAGTTCCTGATTTAAATGAAGAGCTAACACCTCCTTTTGAGTATTCTAGGGATGAAGATAATGGTTGCTCTTTGTTGCAAACTGTGGAGGGGGACGATGATGCAGCTTCTCATGATCTAGAGAAAAATGGTTTAGCAAGATCACATGGGAGTGGGGATTCTCAAACCTGGACCCATGGGCCAGCAGGAGAAGTATCTGCTGTTGATTCACGCTTAGATATGTGCAGAAAAAGGTTAGCAAGCACAATGGAAGAGACACATGATTGTGACAGCACTTTAATTAACGGTTCTCCATTACGCATATGTGATGGTTCATGTTCCTTGGATGAGAACTTTGAGTATTGTGTGAAAGTAATTCGTTGGCTAGAATGTGAGGGTCACATTAAACAGGAATTTAGGTTGAAGTTGCTAACATGGTTTAGTTTAAGGGCGACAGAGCAAGAACGCAGGGTGGTTAATACCTTCATTCAGACTCTTATGGATGATCCGAGTAGTTTGGCAGGGCAACTGGTAGATTCTTTTTATGATATTATATCAAACAAGAGGCAAAAAAATGGATTCAGTATTAAAGCCGGGGCATCAAATTAA 1956 0.4228 MTETKSTGKMIKKQDTKKVSSFSHQPSRKQSRKGENPTRLIPPSDQSSDFGHSNTWICKNAACRAVLSIDDTFCRRCSCCICHLFDDNKDPSLWLVCTSESTQGDSCGLSCHIECALLHKKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLNIAKDARRVDVLCYRIYLSYRLLDGTTKFKDLHQTVQEAKAKLETEVGPVNGVSAKMARGIVSRLPIANDIQKLCSLAIEKADSWLATVHNVNSDSTGGSLPAACKFVFEEVTTSSVKIILIELSNICSEEIKGYKLWYYTSRDESPTKDPVSVFPKTQRRILISNLKPCTEYTFRIISYTDTCDLGHSEAKCFTKSIEVIKNNPSPSVAMNHEKENLLSRGNSSGSKMVPNDAMGNYGFKVRDLGKILRLAWAQEQGYLEEFCCANTKNCCGQSERLDKPRIPEAQLPSVSRGLDLNVVSVPDLNEELTPPFEYSRDEDNGCSLLQTVEGDDDAASHDLEKNGLARSHGSGDSQTWTHGPAGEVSAVDSRLDMCRKRLASTMEETHDCDSTLINGSPLRICDGSCSLDENFEYCVKVIRWLECEGHIKQEFRLKLLTWFSLRATEQERRVVNTFIQTLMDDPSSLAGQLVDSFYDIISNKRQKNGFSIKAGASN 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2330g00020 651 CDD FN3 287 338 IPR003961 GO:0005515
Vium2330g00020 651 PANTHER VIN3-LIKE PROTEIN 2-RELATED 11 646 IPR044514 GO:0010048|GO:0040029
Vium2330g00020 651 Pfam Fibronectin type III domain 263 339 IPR003961 GO:0005515
Vium2330g00020 651 SUPERFAMILY Fibronectin type III 262 338 IPR036116 GO:0005515
Vium2330g00020 651 Gene3D Immunoglobulins 243 347 IPR013783 -
Vium2330g00020 651 MobiDBLite consensus disorder prediction 499 518 - -
Vium2330g00020 651 Pfam PHD - plant homeodomain finger protein 58 176 IPR032881 -
Vium2330g00020 651 ProSiteProfiles Fibronectin type-III domain profile. 257 356 IPR003961 GO:0005515
Vium2330g00020 651 MobiDBLite consensus disorder prediction 1 19 - -
Vium2330g00020 651 MobiDBLite consensus disorder prediction 1 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2330g00020 Vium-Chr2330 134655 143477 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2330g00020 54 642 PHD Gene Family AT3G24440 48.680 2.87e-178 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2330g00020 - - gmx:100816128 1216.45