Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2330g00014 ATGGCTAGTCGACTGAAGGAAGATGAGAAAAATGAACGAATAATTCGAGGTCTTCTTAAACTCACGCCGAATAGGAGATGTATTAACTGTAACAGTCTGGGACCACAATATGTGTGCACGAATTTCTGGACCTTTGTATGCACTAACTGTAGCGGAATCCACCGAGAATTTACACATCGGGTAAAATCAATTTCAATGGCCAAATTTACTGCACAAGAAGTTAGTGCACTTCAAGAAGGTGGAAATCAGCGTGCAAAAGAAATCTATTTTAAGGAATGGGACCCACAGCGTCATTCTTTTCCTGATAGCAGCCATGTTGACAGGCTCCGGGATTTCATCAAGCATGTTTATGTCGATAGAAGATTCAGCAGTGAGAAGACCAATGATAAACCTCCAAGAGTAAAGGGTGACAAGGATGATTTCTATGAAAACAAGAAGACAGAGATGTATCAGGGTGGACCGAAAAGCCCTCCATATGAGGGTCGTTACAGCGATAGGTCTAGTCCTGGTGGAAGAAGTCCAGGATATGATCAAGAAAATAGGCAATATGGTGATTACAAGATAAGTCCTAGTCGTCCTCCTATAATCAATGACTGGCATGGAGTAGAAAGATTTGGGGATCGACGAAAATATGATGATCAGAGAATATCTGATGGAAATCACAAGGGGGAAAGCCATTCTCCTGATCATACCAAGGATCCAGATTCTTCCAGCCCCCCTGTTAGAGAAATCTTGGGAGAAAATGTAGTACCTCTTCGAATAAGTGAACCACCCAAAACAAACGGTGTACAGGCTGCTAATGGCTCAACACTCGCACAGAGGACTTCATCTTCCAGTACCTTAGCATCCAGCCATGTAACCCGGACAGAAGTTAAGCCTGAGACTATTAAGAGCCTTATTGATTTTGATGATGATCCTGAACCATCTGTTACTCCAGCAATTACTCAAGCCCAACAAACTACTGTTGCTGAACTTGGGATGCCTGCAAATTCCAATGATAATAATTGGGCCTCTTTTGATTTTTCTCCTGAGGCAAAAGCACCTCAAGGTCCTTCAATCGTAAATCCACTTGAATCTGTGCTGATACAATTGACAGTACCAGTATCTTTACCTTCTCAGGTTTCCCGAGCCCAAGGACCTTTGACTGGATCAACTCTTACTGCTACTGCTGCTGGAGGACAGTGGGCTAGTTTGCAGAATCAGCAACAACAACCTTTGTTCACTGCTGCGGCAAGTCAGCCTTCTATTCAACGAGCCACACCACCAGCTGGTGCTGCTTTGAATAATCAGCCCTGGACCGTACCATCAGTACAAGGGCATCCAAGCACATCAATACCCCATGCATCACATCTTGTCCCAAAGCCTGCCAATGAGGCTATGTCCAGTGTTGTTTTACAAACTTCTGCAGTTGACATCAAACCAAATGGAAGAAGTGAGCTTCCGGAGGATCTATTCACGGTAAATTATCCATACTTCCCTGCTCCAGTCCCAGGTTGGCAAACGGGTCTACCACATAGTATGGGTATCCCAATTCAATACAATAATGCAGTGCCCATGCCAAGTTTTCCACAAGCATCAAAGTCAATAAATCCATTCGATGCCAGTAACGAACCTACTCCAGTTCAAGTCCCAACATTTCCTTCTATGTCATCTCTGCAAAGTGCTCTGCCTAGTGTAACGCCTTCAGCTAAAATCCACCCTTCAGATATGGGAAATCCATCTTTTGCCTGGAATCCGTCATCATCATATGCATTAGTGCCGCCTCCTCAAGCACAAACTATTGCACCCGCAATGGGACCAGGGGCATACATGGGAATACATGTTAACAATCCGCAGATGGTCATTAACATGCCAATGCCGAGGCATCAAGGATTTGGGAGGTTGGCGACCGAGGGAACTGCTTTTGGCTTCTCAAATCCAGATCAGAAGCTGAGTAGTAGTAGGTTGTCAACTGCTGTTACCCCAAACACCTTTCAGGCAGGAGGAAATCCTTTCGGATGA 2001 0.4463 MASRLKEDEKNERIIRGLLKLTPNRRCINCNSLGPQYVCTNFWTFVCTNCSGIHREFTHRVKSISMAKFTAQEVSALQEGGNQRAKEIYFKEWDPQRHSFPDSSHVDRLRDFIKHVYVDRRFSSEKTNDKPPRVKGDKDDFYENKKTEMYQGGPKSPPYEGRYSDRSSPGGRSPGYDQENRQYGDYKISPSRPPIINDWHGVERFGDRRKYDDQRISDGNHKGESHSPDHTKDPDSSSPPVREILGENVVPLRISEPPKTNGVQAANGSTLAQRTSSSSTLASSHVTRTEVKPETIKSLIDFDDDPEPSVTPAITQAQQTTVAELGMPANSNDNNWASFDFSPEAKAPQGPSIVNPLESVLIQLTVPVSLPSQVSRAQGPLTGSTLTATAAGGQWASLQNQQQQPLFTAAASQPSIQRATPPAGAALNNQPWTVPSVQGHPSTSIPHASHLVPKPANEAMSSVVLQTSAVDIKPNGRSELPEDLFTVNYPYFPAPVPGWQTGLPHSMGIPIQYNNAVPMPSFPQASKSINPFDASNEPTPVQVPTFPSMSSLQSALPSVTPSAKIHPSDMGNPSFAWNPSSSYALVPPPQAQTIAPAMGPGAYMGIHVNNPQMVINMPMPRHQGFGRLATEGTAFGFSNPDQKLSSSRLSTAVTPNTFQAGGNPFG 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2330g00014 666 Gene3D Arf GTPase activating protein 2 133 IPR038508 -
Vium2330g00014 666 CDD ArfGap_AGFG 12 124 - -
Vium2330g00014 666 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Vium2330g00014 666 MobiDBLite consensus disorder prediction 201 237 - -
Vium2330g00014 666 SMART arf_gap_3 12 131 IPR001164 GO:0005096
Vium2330g00014 666 Pfam Putative GTPase activating protein for Arf 13 125 IPR001164 GO:0005096
Vium2330g00014 666 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Vium2330g00014 666 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Vium2330g00014 666 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Vium2330g00014 666 MobiDBLite consensus disorder prediction 123 146 - -
Vium2330g00014 666 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 131 IPR001164 GO:0005096
Vium2330g00014 666 PANTHER ARFGAP/RECO-RELATED 1 666 IPR044820 GO:0005096
Vium2330g00014 666 MobiDBLite consensus disorder prediction 260 289 - -
Vium2330g00014 666 MobiDBLite consensus disorder prediction 123 292 - -
Vium2330g00014 666 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2330g00014 Vium-Chr2330 107799 115157 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2330g00014 12 122 C2H2 Transcription Factor Family AT4G21160 34.188 4.33e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2330g00014 - - pvu:PHAVU_002G314500g 1111.67