Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2330g00013 ATGGCTAGTCGACTGAAGGAAGATGAGAAAAATGAACGAATAATTCGAGGTCTTCTCAAACTCACGCCGAATCGGAGATGTATTAACTGTAACAGTTTGGGACCACAATATGTGTGCACAAATTTCTGGACGTTTGTATGCACTAACTGTAGCGGAATACACCGAGAATTTACACATCGAGTAAAATCAATATCAATGGCCAAATTTACTGCACTAGAAGTTAGTGCACTTCAGGAAGGTGGAAATCAGCGTGCAAAAGAAATATATTTTAAAGAATGGGATCCACAACGTCATTCTTTGCCTGATAGCAGCAATGTTGGCAGGCTCCGGGATTTCATCAAGCATGTTTATGTGGATAGAAGATTCAGTGGTGAAAAGACCAATGATAAACCTCCAAGAGCCAAGGGTGACAAGGATGATTTCTATGAAAACAAGAGGACAGAGACGTATCAAGGAGGACCTAAAAGCCCTCCTTATGAGGATCGTTACAGTGACAGGTCTAGTCCTGGTGGAAGAAGTCCGGGATATGATCAAGAAAATAGGCAATATGGTGGTGATTACAAGATAAGTCCTGGTCGTCCTCCTATAATCAATGATTGGCGTCGAGAAGAAAGATTTGGAGATGGACGGAAATATGAAGATAATAAAATATCCGATGGAAATCATAAGTTGGAAGGCCATTCTCCTGATCGAACCAAGGATTCAGGTTCTTCCAGCCCACCCATTGTCCGACCTGTTAGAGAGATCTTGGGAGAAAATGTAGTACCTCTTCGAATAAGTGAACCGCCCAAAACAAACAGTGGTCTGGCTGCTAATGGCTCAACACTCACGCAGAGAACTGCATCATCCAGTAGCTTAGCATCCAGCCATGGAACCCCAGTAGAAGTTAAGCCCGAGACTCTGAAGAGCCTTATTGATTTTGATGATGATCCTGAACCATCTGTTGCTCCATCAATTCCTCAAGCCCGTCAAACTGCTGTGGCTGAACTTGGGATGCCTGCAAATTCCAATGATAACAATTGGGCATCTTTTGATTTTGCTCCTGAGGAAAAAACACCTCATGGTCCTTCAAACGTTAATCCACTTGAATCTATGCTTACTCAATTGACAGGACCCGTATCTTTACCTTCTCAAGTTTCCCAAGCCCAAGGATCTGTGACGGGATCAACTCTTGCTGCTACTGCTGCTGGAGGTACAATTGCTAGCGGCTTCTCAACATTCCCACACAGTGGTGCTTCAGTAACATCTTCCGGATTGATGACAGCATCGACTCTGAATAATGCTGGACAGTGGGCTAGTTTGCAGTATCAGCAACAGCAACCTTTGTTTGCCGCAGCTGCTAGTCAGCCTTCTATTCAACAAGCTACACCACCAGTCGGTGGAGCTTTGAATAATCAGCCCTGGACTATACCCTCGGTACCATCAATACAAGGGCATCCAAACACGTCAATGCCCCATCCGTCGCACCTTGTCCCAAAGTCTGCCAATGAGGCTAAATCCAGTGTTGTTTTACAATCGTCTACAGTAGATATGAAGCCAAGTGGAAGAAGTGAACTTCCGGAGGATCTATTCACAGTTAAATATTCATCCTTCCCTGCTCCAGTCCCAGGTTGGCAAATGGGTCTACCACCTAGCATGGGTATTTCAATCCCATACAATAATGCGGTGCCCATTCCAAGTTTTCCACAAGCATCAAAATCAAAAAATCCATTTGATGTCCATAACGAACCTACTCCAGTCCAAGCCCCAACATTTCCTTCCATGTCATCTCTGCAAGGTGCTCTGCCAATACCTTCAGCTACAATGCACTCTTCAAACATGGGTAATCCATCTCTTGCCTGGAATCCGTCCTCATCATCATATGCATCAGTGCCACCTCCTCAAGCACAAACCCTTGCACCCGCAATGGGACCAGGGGCATACATGGGACAACAAATGGTCTCTAACATGCCAATGCCAAGGCATCAAGGATTTGGGAATTTTACTACTGAGGGAACTGCTTTTGGCTTCTCAAATTCAGATCAGCAGCTGAGTGGTAGTAGGTTATCAACTGCTGTTACCCCAAACAACTTCCAGGCAGGAGGAAACCCTTTCGGATGA 2100 0.449 MASRLKEDEKNERIIRGLLKLTPNRRCINCNSLGPQYVCTNFWTFVCTNCSGIHREFTHRVKSISMAKFTALEVSALQEGGNQRAKEIYFKEWDPQRHSLPDSSNVGRLRDFIKHVYVDRRFSGEKTNDKPPRAKGDKDDFYENKRTETYQGGPKSPPYEDRYSDRSSPGGRSPGYDQENRQYGGDYKISPGRPPIINDWRREERFGDGRKYEDNKISDGNHKLEGHSPDRTKDSGSSSPPIVRPVREILGENVVPLRISEPPKTNSGLAANGSTLTQRTASSSSLASSHGTPVEVKPETLKSLIDFDDDPEPSVAPSIPQARQTAVAELGMPANSNDNNWASFDFAPEEKTPHGPSNVNPLESMLTQLTGPVSLPSQVSQAQGSVTGSTLAATAAGGTIASGFSTFPHSGASVTSSGLMTASTLNNAGQWASLQYQQQQPLFAAAASQPSIQQATPPVGGALNNQPWTIPSVPSIQGHPNTSMPHPSHLVPKSANEAKSSVVLQSSTVDMKPSGRSELPEDLFTVKYSSFPAPVPGWQMGLPPSMGISIPYNNAVPIPSFPQASKSKNPFDVHNEPTPVQAPTFPSMSSLQGALPIPSATMHSSNMGNPSLAWNPSSSSYASVPPPQAQTLAPAMGPGAYMGQQMVSNMPMPRHQGFGNFTTEGTAFGFSNSDQQLSGSRLSTAVTPNNFQAGGNPFG 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2330g00013 699 MobiDBLite consensus disorder prediction 616 637 - -
Vium2330g00013 699 Pfam Putative GTPase activating protein for Arf 13 123 IPR001164 GO:0005096
Vium2330g00013 699 MobiDBLite consensus disorder prediction 265 291 - -
Vium2330g00013 699 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 135 - -
Vium2330g00013 699 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Vium2330g00013 699 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Vium2330g00013 699 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Vium2330g00013 699 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Vium2330g00013 699 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Vium2330g00013 699 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Vium2330g00013 699 MobiDBLite consensus disorder prediction 579 603 - -
Vium2330g00013 699 MobiDBLite consensus disorder prediction 123 146 - -
Vium2330g00013 699 MobiDBLite consensus disorder prediction 123 296 - -
Vium2330g00013 699 Gene3D Arf GTPase activating protein 2 133 IPR038508 -
Vium2330g00013 699 CDD ArfGap_AGFG 12 122 - -
Vium2330g00013 699 PANTHER ARFGAP/RECO-RELATED 1 699 IPR044820 GO:0005096
Vium2330g00013 699 MobiDBLite consensus disorder prediction 197 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2330g00013 Vium-Chr2330 98540 105825 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2330g00013 12 122 C2H2 Transcription Factor Family AT4G21160 33.333 2.74e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2330g00013 - - pvu:PHAVU_002G314500g 1151.35