LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium2330g00007	ATGGGTTGGTTTACTAAACTGCTCAAGGGATCCAACCGTAAATATTCAGGAGGAGGATATCATGGGAAATATGAAGAGGACAGATATTCAGACAATCATGATAATTCAGCGGATGATTTGACGGAAATTGAGAAAGAAGAAATTGATCGGGCAATAGCACTCTCTCTTTCAGAGGCAGATCCGAAAGGGAAAGGAGTTATTGAGGACGACTCTGAATCTGAAGATGATGAACTGTGTCCACTTGACGATGAGGAAGACAATCGTGTTGGGGAAGTTCAGCAAGACGAAGATGACCATCATGCTCAAATTCAACAGGATGAAGACAAAAATCTTGATGAATTTCAACTTGAGGAAGATGAACAACTTGCCAGGGCAATTCAAGAAAGTTTGAGCATCAGTTCTCCTCCTCGATCTGACACTGATTCTTTATTTCAACCTCTTGCAAACTTATTCCCACCTGTTTACAGAACTTGTGCTGGTTGCAATGCCGAGATTGGCAGTGGAAGATTTTTGAGTTGCATGGGAGGTTTTTGGCATCCCGAATGTTTTTGTTGTCATGCTTGCAAACTTCCAATCACTGATTATGAGTTTTCAATGTCTGGAAATGGCCGTTATCATAAGTCCTGCTATAAGGAGTTGCATCATCCGAAATGTGATGTTTGCAAAAACTTTATCCCACCAAACTCAGGTGGCCTCATTGAGTATAGAGCACATCCTTTCTGGCTACAAAAATATTGCCCATCGCATGAGCGTGATGGAACTCCTCGTTGTTGTAGCTGTCAAAGAATGGAGTCAGTGGATGCCAAATATCTGTTGCTTGATGATGGCCGAAAGCTGTGTCTGGAGTGTCTTGACTCAGCTATCATGGATACCCATGAATGCCAACCTCTCTATGTTGAGATACAAGAATTTTATGAAGGCTTACATATGAAGATAGAGCAGCAAATTCCTATGCTTTTGGTTGAGAGACAAGCACTGAACGAAGCCATGGAGGGAGAGAAGAATGGTCATCACCACTTACCTGAAACTAGAGGACTTTGCTTGTCTGAAGAGCAAACTGTTCCCACTATTTTAAGGAGACCAAGGATAGGGGCAGGATACCAGCTCATAGATATGATAACTGAGCCTTTTAGACTGATCCGTCGATGCGATGTGACAGCCATACTTGTTTTGTATGGCCTTCCCAGGTATCCTTCTGATGCCTACNTTTAA	1212	0.4241	MGWFTKLLKGSNRKYSGGGYHGKYEEDRYSDNHDNSADDLTEIEKEEIDRAIALSLSEADPKGKGVIEDDSESEDDELCPLDDEEDNRVGEVQQDEDDHHAQIQQDEDKNLDEFQLEEDEQLARAIQESLSISSPPRSDTDSLFQPLANLFPPVYRTCAGCNAEIGSGRFLSCMGGFWHPECFCCHACKLPITDYEFSMSGNGRYHKSCYKELHHPKCDVCKNFIPPNSGGLIEYRAHPFWLQKYCPSHERDGTPRCCSCQRMESVDAKYLLLDDGRKLCLECLDSAIMDTHECQPLYVEIQEFYEGLHMKIEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVPTILRRPRIGAGYQLIDMITEPFRLIRRCDVTAILVLYGLPRYPSDAYX	403

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium2330g00007	403	MobiDBLite	consensus disorder prediction	1	138	-	-
	Vium2330g00007	403	CDD	LIM_DA1	158	210	-	-
	Vium2330g00007	403	SMART	lim_4	157	209	IPR001781	-
	Vium2330g00007	403	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	154	183	-	-
	Vium2330g00007	403	SMART	uim	117	136	IPR003903	-
	Vium2330g00007	403	SMART	uim	43	62	IPR003903	-
	Vium2330g00007	403	MobiDBLite	consensus disorder prediction	70	91	-	-
	Vium2330g00007	403	MobiDBLite	consensus disorder prediction	92	124	-	-
	Vium2330g00007	403	ProSitePatterns	LIM zinc-binding domain signature.	158	192	IPR001781	-
	Vium2330g00007	403	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	185	245	-	-
	Vium2330g00007	403	MobiDBLite	consensus disorder prediction	19	53	-	-
	Vium2330g00007	403	ProSiteProfiles	LIM domain profile.	156	216	IPR001781	-
	Vium2330g00007	403	PANTHER	PROTEIN DA1-RELATED 2	3	396	IPR045218	-
	Vium2330g00007	403	Pfam	Protein DA1	307	396	IPR022087	-
	Vium2330g00007	403	ProSiteProfiles	Ubiquitin-interacting motif (UIM) domain profile.	117	136	IPR003903	-
	Vium2330g00007	403	Gene3D	Cysteine Rich Protein	155	217	-	-
	Vium2330g00007	403	FunFam	Protein DA1-related 1	152	211	-	-
	Vium2330g00007	403	Pfam	LIM domain	158	212	IPR001781	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium2330g00007	Vium-Chr2330	87239	90716	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Others	Vium2330g00007		DA1-like	8.2e-40	CL0126

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium2330g00007	-		-	gmx:100806605	746.503