Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2330g00006 ATGAAGAAGAAACAAGGACACTCCTTTAATCTCAGACTCCTCCTCGTTGGCTTCTTTCTGGCCACATGTGCCAATGCCTCCCCTCACACGCCAACTCAATCGCGCCATCTTCTGTACTACAGAGACGAGTTTGGAGACAGAGGGGAGAATGTCACCGTAGACCCTTCCCTTGCTTTCCAAAATGACCGTCTCAGAAACGCTTACATAGCTCTGCAAGCTTGGAAGCTCGCCATTTTATCTGATCCCCGCAACCAGACAACCGACTGGGTAGGATCCGACGTTTGTAGCTACACCGGTGTATACTGTGCACAAGCGCTCGACAACCCCTCCGTCCGTACAGTCGCCGGCATTGATCTCAACCATCAGGACATTGCCGGCTATTTACCGGAGGAGCTCGGTTTGCTCGTAGATCTTGCACTATTCCACATCAACTCCAACAGATTCTGCGGCACTGTGCCCCACACGTTCCGGAAGTTGGTACTCCTCTACGAGCTGGATCTCAGTAACAACCGCTTTGCGGGGAGGTTCCCCGAGGTGGTTCTGCGCCTTCCTTCGCTCAAGTTCTTGGATCTTAGGTTCAACGAATTCGAAGGAGCTGTGCCCCGGGAATTGTTCGACAAAGATCTCGACGCCATTTTCATCAACGACAATCGTTTCGTGTTTGACCTTCCAGACAACTTCGGCAACTCCCCCGTCTCCGTCATCGTCCTCGCCAACAACAGATTCCACGGCTGCATTCCCCACAGCCTCGGCAACATGTCCAACCTCAACGAGATCATTCTCATGAACAACGCATTCCGATCCTGCTTGCCCTCCGAGATAGGCTTGTTGAAGAATCTCACGGTGTTCGACGTCAGCTTTAACCAACTTCTCGGCCCCTTACCAAGCGCCGTTGGAAATGCCGTCAGCTTGGAGCAGCTCAACGTGGCCCACAACTTACTCTCCGGTCAAATTCCTCCCAGTATATGTATGTTGCCTCACCTTCTCAACTTCACTTACTCCTTTAACTTCTTCACCGGCGAGCCTCCTGCCTGTCTCGCCTTGCCGGCGTTTGACGATAGGATCAACTGCTTGCCGGCGAGGCCCGTTCAGAGGCCTCCGGCGCAATGTCAGGCTTTCTTGTCTAAGCCTGTGGACTGTAACTCCTTTAACTGCAAGCCATTTGTTCCTTCACCTCTTTCCCCCACAACACCTGCAACTCCTTCACCACCATCTCCTGGGACACCTTCTCCTCCATCACCTGGGACACCTTCACCAGTAACTCCTTCGCCTCCATCACCAGGGACACCTTCACCTGTAACTCCTTCACCACCATCTTCTGGGACACCACCTGTAACTCCTTCGCCTCCATCACCTGGGACACCTTCACCAGGAACTCCTTCACCACCATCTTCTGGGACACCACCTGTAACTCCTTCGCCTCCATCACCTGGGACACCTTCACCAGGAACTCCTTCGCCTCCATCACCTGGGACACCTTTCCCTGTCACTCCTTCGCCCCCATCCCCTGGGTCACCCTCACCTGTAACTCCTTCGCCTCCATCACCTGGGACACCTTCACCAGTAACTCCTTCGCCTCCATCACCAGGGACACCTTCACCTGTAACTCCTTCACCACCATCTTCTGGGACACCACCTGTAACTCCTTCGCCTCCATCACCTGGGACACCTTCACCAGGAACTCCTTCGCCTCCATCACCTGGGACACCTTCACCAGTAACTCCTTCGCCTCCATCACCAGGGACACCTTCACCTGTAACTCCTTCACCACCATCTTCTGGGACACCACCTGTAACTCCTTCGCCTCCATCACCTGGGACACCTTCACCAGGAACTCCTTCGCCTCCATCACCTGGGACACCTTTACCTGTAACTCCTTCGCCACCATCTCCTGGGTCACCCTCACCTGTAACTCCTTCGCCTCCATCACCTGGGACACCTTCACCCGTAAATCCTTCGCCGTTACCTTCACCTACAACACCTTCGCCTCCTTCGCCTGCCGCACCTTCCCCATTACCTTCACCTACGACACCTTCACCACTACCTACACCTCCTTCGGAACCACCGGTGGTGGGACATTCCCCTCCACCCCGGCCAGTGGCACCTTCTCCACTACCACCAATTCACACTCCTCCTTCACCGGTGTATTTGCCACCACCACATTCTTCCCCTGCTCCACCTGGCTACTCTTCACAACCTCCTCCACCTTCGCAATTGCCGCCTCCATCATACACTCCGCCTTCTCCAGTGACACCTTTTCCTACTCCAACGCCACCAAATGGTGTCCACTCTCCACCGCCACCGGCTCCTACATTCTCGACACCACCACCTTCACATAATTATGGCTCATCGCCACCTCCTACACCTCATCACTCACCATCGCCTCATCCTTACCCTTATTTATCACCCCCACCACCTCCTTATCCTGTTCGTGTCCCACCTCCACCACCACCTTGTACAGAACTTCTTCCACCCCCTCCGCAATCAACACCTTCTCCCACACCTTACCTCCCACCACCATCCCCATCTCACCCACCTTATCACCCGCCACCATCCCCTTCTCCCTCTCCAACTCCACCGGTTCAATACAGTTCGCCTCCCCCGCCGCCTCCTCCACCGGCAGTTTCTCAACCGCCACCTGTTGTATACCAAAACCCACCACCTGCCCCTGTATATGAAGGGCCATTGCCACCCATAGTGGGACTCCCATACGCATCGCCTCCGCCTCCACCCTTTTATTGA 2742 0.55 MKKKQGHSFNLRLLLVGFFLATCANASPHTPTQSRHLLYYRDEFGDRGENVTVDPSLAFQNDRLRNAYIALQAWKLAILSDPRNQTTDWVGSDVCSYTGVYCAQALDNPSVRTVAGIDLNHQDIAGYLPEELGLLVDLALFHINSNRFCGTVPHTFRKLVLLYELDLSNNRFAGRFPEVVLRLPSLKFLDLRFNEFEGAVPRELFDKDLDAIFINDNRFVFDLPDNFGNSPVSVIVLANNRFHGCIPHSLGNMSNLNEIILMNNAFRSCLPSEIGLLKNLTVFDVSFNQLLGPLPSAVGNAVSLEQLNVAHNLLSGQIPPSICMLPHLLNFTYSFNFFTGEPPACLALPAFDDRINCLPARPVQRPPAQCQAFLSKPVDCNSFNCKPFVPSPLSPTTPATPSPPSPGTPSPPSPGTPSPVTPSPPSPGTPSPVTPSPPSSGTPPVTPSPPSPGTPSPGTPSPPSSGTPPVTPSPPSPGTPSPGTPSPPSPGTPFPVTPSPPSPGSPSPVTPSPPSPGTPSPVTPSPPSPGTPSPVTPSPPSSGTPPVTPSPPSPGTPSPGTPSPPSPGTPSPVTPSPPSPGTPSPVTPSPPSSGTPPVTPSPPSPGTPSPGTPSPPSPGTPLPVTPSPPSPGSPSPVTPSPPSPGTPSPVNPSPLPSPTTPSPPSPAAPSPLPSPTTPSPLPTPPSEPPVVGHSPPPRPVAPSPLPPIHTPPSPVYLPPPHSSPAPPGYSSQPPPPSQLPPPSYTPPSPVTPFPTPTPPNGVHSPPPPAPTFSTPPPSHNYGSSPPPTPHHSPSPHPYPYLSPPPPPYPVRVPPPPPPCTELLPPPPQSTPSPTPYLPPPSPSHPPYHPPPSPSPSPTPPVQYSSPPPPPPPPAVSQPPPVVYQNPPPAPVYEGPLPPIVGLPYASPPPPPFY 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2330g00006 913 Gene3D Ribonuclease Inhibitor 67 352 IPR032675 -
Vium2330g00006 913 SUPERFAMILY L domain-like 77 349 - -
Vium2330g00006 913 FunFam Leucine-rich repeat extensin-like protein 5 230 369 - -
Vium2330g00006 913 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 35 543 - -
Vium2330g00006 913 Pfam Leucine rich repeat N-terminal domain 70 102 IPR013210 -
Vium2330g00006 913 FunFam Leucine-rich repeat extensin-like protein 1 68 229 - -
Vium2330g00006 913 MobiDBLite consensus disorder prediction 392 913 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2330g00006 Vium-Chr2330 57785 61182 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2330g00006 32 392 Leucine-rich Repeat extension Gene Families AT3G24480 75.414 0.0 603
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2330g00006 - - vum:124830001 798.89