Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2330g00005 ATGCTGGCAAAGATGAGTGCTCTCTCTGTTTCCAGTGACACCCACAACAACTCCTTCCTCAACATGCCCACCATCAAGTTTACCAAGCTCTTCATCAATGGAAATTTTGTTGATTCCATATCAGGGAGGACATTTGAGACTATAGATCCAAGAACAGAAGAGGTAATTGCAAGAGTGAGTGAGGGAGACAGAGAAGACATTGATGTTGCTGTTGCAGCAGCACGTGAAGCGTTCGACCGAGGTCCATGGCCTCGCATGGCTGCCTCTGAGAGGGCAAAGATAATGATGAAATGGGCCGACCTAATTGAAGAAAACATAGAAGAAGTAGCAGCATTAGATACCATGGATGCTGGAAAGTTGTATTATTCCAACAAGTTTGGAGAAATTCCAGCAGCAGCAAATCTTCTGCGTTACTATGCAGGAGCTGCTGATAAAATTCACGGCGAAGTACTAAGAGTGAACGGAAATTTCCATGCATATACACTGATGGAACCGATTGGTGTTGTGGGACACATAATTCCCTGGAATGCACCCAGTCACTCATTTTTCATCAAGGTTAGCCCTTCCTTAGCAGCAGGCTGCACCATGGTCCTCAAGCCTGCCGAACAAACACCTCTCTCTGCTTTGTTCTATGCTCATCTTGCTAAGCTCGCTGGAATCCCAGATGGAGTGCTGAATGTAGTACCCGGATTTGGCCCAACTGCTGGTGCAGCAATAAGCTCGCACATGGAAATTGATGCGGTCAGTTTTACTGGTTCAGTTGAAGTAGGGCGCGAAGTGATGCAAGCTGCTGCTAGGAGCAATTTAAAACCAGTTTCACTTGAATTAGGAGGCAAGTCTCCTCTCATTATTTTCGATGATGCTGATATAGACCAGGCAGTGGAGCTTGCAATCATGGGCATCATGTATAACAAGGGAGAAGTTTGTGTTGGTAGTTCTCGCGTGTATGTCCAGGAAGGGATCTATGATGGATTTGAAAAGAAATTGGTGGAGAAGGCAAAAGCTTGGGTCGTTGGGGATCCTTTTGATCCCAAATCGCAGCAAGGGCCTCAAGCTAGCAAGGACCAATTCAAGAAAATACTTTCCTATATTGAGCACGGAAAGAAAGAGGGTGCAAAACTTTTGACCGGAGGTAACAGAGTTGGCGATAAAGGTTGCTACATTGAACCCACAGTTTTCTCCAACGTAAAGGACGACATGGTTATAGCACAAGAGGAAATATTCGGCCCTGTATTGGCATTGATGAAATTTAAGACAATAGAGGAAGCAATTAAAAGTGCGAATAATACGAAGTACGGTTTAGCAGCAGGCATTATGACAAACAATTTGGATACATCAAACACAATGTCAAGATCTATTCGTGCAGGCATTATTTGGATAAACTGCTATTTCGTTGCGGGGAGTGAAGTTCCTTTTGGAGGGTACAAGATGAGTGGATTTGGAAGAGATTTGGGCATGGAGGCCCTTCACAAATACTTGCAAATTAAATCTGTTGTTACACCTATTCGCAATTCTCCTTGGCTTTGA 1527 0.4427 MLAKMSALSVSSDTHNNSFLNMPTIKFTKLFINGNFVDSISGRTFETIDPRTEEVIARVSEGDREDIDVAVAAAREAFDRGPWPRMAASERAKIMMKWADLIEENIEEVAALDTMDAGKLYYSNKFGEIPAAANLLRYYAGAADKIHGEVLRVNGNFHAYTLMEPIGVVGHIIPWNAPSHSFFIKVSPSLAAGCTMVLKPAEQTPLSALFYAHLAKLAGIPDGVLNVVPGFGPTAGAAISSHMEIDAVSFTGSVEVGREVMQAAARSNLKPVSLELGGKSPLIIFDDADIDQAVELAIMGIMYNKGEVCVGSSRVYVQEGIYDGFEKKLVEKAKAWVVGDPFDPKSQQGPQASKDQFKKILSYIEHGKKEGAKLLTGGNRVGDKGCYIEPTVFSNVKDDMVIAQEEIFGPVLALMKFKTIEEAIKSANNTKYGLAAGIMTNNLDTSNTMSRSIRAGIIWINCYFVAGSEVPFGGYKMSGFGRDLGMEALHKYLQIKSVVTPIRNSPWL 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2330g00005 508 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 10 498 - -
Vium2330g00005 508 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 274 281 IPR029510 GO:0016491
Vium2330g00005 508 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 32 298 - -
Vium2330g00005 508 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 278 467 IPR016163 GO:0016620
Vium2330g00005 508 FunFam Aldehyde dehydrogenase, putative 470 496 - -
Vium2330g00005 508 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 32 496 IPR016162 GO:0016491
Vium2330g00005 508 FunFam Aldehyde dehydrogenase3 278 467 - -
Vium2330g00005 508 Pfam Aldehyde dehydrogenase family 37 498 IPR015590 GO:0016491
Vium2330g00005 508 SUPERFAMILY ALDH-like 19 502 IPR016161 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2330g00005 Vium-Chr2330 47805 50293 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2330g00005 20 508 Aldehyde Dehydrogenase Gene Family AT3G24503 67.959 0.0 705
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2330g00005 K12355 - gmx:100527654 876.7