Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2328g00005 ATGGCATCAAATGTTGCAGTGAAGTTGGTTAGTGTTCTGCCTAATCCATTATTGCAATCACATATGTTGGATCTTGTTTATTGTCTATCATCCTTGCTATCTTCACATCAAGTAGAAGTTGCTATACCCTGTGCTACCACTTTGAATTTTGTAATCTCAAATTTGAGTGCTACAAATGAGAAGGAAGTTATGGAAGCACTGAAAGAAACAGAGGCTTCCCTTTGGATTGTTGGAAATATAAAGGATTTTGCTGAAGGTGTAAAGAAAATTGAGTATTTCGAAGAGATGAGTTTACTTTTGAGCACTATACTATGGCGCTGGCCACCGTCTAGGTTCTCTGTTTGTAATGATGTAATACTTATGAAAGGTCTAGCAAACATCCATACAAAGACAGATAGTTCTATTAAACTCGCACTTCTAAAGTTGTACACGTCAATAGCTTTGTGTGATTCTGCAGCAAGAAGACTTATAGAGGATGAAGAAATATTTCCACAAATGTTTGTGCAGGCAATGGGAAAATCAAACCCTCATGCTATTCGGATAGAGGGGTTTAGGCTTGCTCAGTGCCTATTGAGATCCCAAGATAATTGTTTAAAAGTGGTTGGTTTGTGTGGTGATGCTCTTGTTGAGGCCATCATTTGTGGAATGACAGAACCTAGGGTGACTTCTAAAAAGTTTGGAAACAACCACGGGTCTTTGTCAGTGGAAGCATGCCAGTTGGCTCTAATTACTCGCTGGGCAGGTGATCATCATACCAACTTTTGGAAACAAGGAATTGATAGAGTCCTTCTTAGTCTTCTGATTGAAAATATTGAAGACCAATTGTTTGAACCCGTCTTGGCTTTGGAAAAACAAATATATATGGCAAAAGAGGGATTAAAAGCCAATTATCATCTCGGTCTTAGGAGTTATCTGTGGGACATTCTTGGGTGGCTTACAATTCATTGGGGAGAAAATTTAAACCCTTATACTCGTGGTAGTGAGCTCTGCATCAAGTTACTAATTACATGTGCATGCTTGAGTTTTGTGGATACACTTGAAAAATGGTGCAGAATTTGTCAAAAGGATATTGATGATCATTTTCAAAGTGAACCTGTATCAAGGGCCGTTCTAATGATGATTCATTCTCCATGTAATTCCATCTCCTCACACACTAAATTCTTATTATCAGATGTACTGAAGGTGAAAGGCATGTCATGCTTGAAAAGCTTATTACATACTCTAGATTATACATCATCCCTAGAAAGCTATGGTTCATTTGATAAACTTCAACTGGTTATTAATTTAATTGGGTTTACTTGTCTTTCAAGTTTACCACAATACCAAAGATGTATCATTGAGAGCAAAGGGATAAAGGTGATTGTTCTTCTTCTGAAACGATGCTTAAATAATGACATTCATATCGAAAGGCAAAGCTTTACTCCTCATTTGCACACACATGAAAGGTCTTGGTGCTGTTTTGATAAAGAAGATTGGGAAGGCTCCAACATTCTCTTATTTTATAGTTTGTTGGCCTTAACAGAAATTCTTCATCAGTGTGACCTTTTACAAGAGAATCCTCAGCAATTTTCTGGAGAGGTGACAAACATTACACCACAGTTCGTTAGCAAACTTCAAGAGATCTGTAAAAGCAACTCTTTCAGTCCTGGTGTGAGATGGTATGTTTCTTATATTCTAACTTATTTTGGATATTATGGCTTCCCAACTGAATTAGCCAAAAGGATTGGAGAATCTCTCAATAAGGAAGAATACTCAGATATGAAGCTTGTCTTAGCAAATGGGGAATCTCTGAGTGTTCATGTTGCTATTCTTGCTGTTCGATGTCCATCACTAGTGCCTCCTCAATTGTTACCTTGTAGGAAGAGTTCTAAAGAGATAGCAGATGAGTTTGTCAGAGAGACCGTGAGAGAAGTTCGATTATCTTCTCATGTTGGTTATGAAACATTGGTGTTGTTGTTGGAATATGTATACTTGGGATGCTTACGTGCCAGTGAAGAAGCAGCAAAGAAGCTAAAAGTTCTTGCTAAGCGCTGCAATCTACAGCCTTTGTTCCAAATGCTTCACAGACAGCATCCGAAATGGGGCTTACCTTTCCCCAGCTTTAATCTTACGTCAGCTTTTGGTTTAGCTGGAAGTTGTTTTTCGGATATCGTATTGGGAGCTAAATCAAATGAGCTTGCTGGGTGGACATGCGATATTTGTTCTGACACAGTACCCCATATGCATGTTCACAAAGTTATATTGCAGTCTGGTTGTGATTATCTACAAGGTTTGTTCCGGTCAGGAATGCAAGAAAGTCATTCACAAGTAATAAAAGTTGATATTAGCTGGCAAGCATTGATTAAACTAGTGCAGTGGTTTTATTCTGATGAGCTGCCTGGTCCTCCATCTGGATGCTTGTGGGATAATATGGATGATCAAGAAAAGCTATTTAATCTACAACCATATGTGGAGCTTTATTGGCTTGCTGAGTTCTGGATTTTAGAAAATATTCAGGAAGCTTGCTTTAATGTTATTATGTCTTGTCTTGATTCTTCCTGGCGGTTGTCCATTAGAATAATCAAAATGGCTTATAATCTCTCTTTGTGGAAGTTAGTTGATATTGCTGCAAATCTCATGGCTCCTTCATATCGTCAATTACGAGATTCTGGTGAACTAGAAGAATTTGATGATGCACTAGTGCACTTGATTTATTCTGCTTCTATCCAACTTAACTAA 2718 0.3804 MASNVAVKLVSVLPNPLLQSHMLDLVYCLSSLLSSHQVEVAIPCATTLNFVISNLSATNEKEVMEALKETEASLWIVGNIKDFAEGVKKIEYFEEMSLLLSTILWRWPPSRFSVCNDVILMKGLANIHTKTDSSIKLALLKLYTSIALCDSAARRLIEDEEIFPQMFVQAMGKSNPHAIRIEGFRLAQCLLRSQDNCLKVVGLCGDALVEAIICGMTEPRVTSKKFGNNHGSLSVEACQLALITRWAGDHHTNFWKQGIDRVLLSLLIENIEDQLFEPVLALEKQIYMAKEGLKANYHLGLRSYLWDILGWLTIHWGENLNPYTRGSELCIKLLITCACLSFVDTLEKWCRICQKDIDDHFQSEPVSRAVLMMIHSPCNSISSHTKFLLSDVLKVKGMSCLKSLLHTLDYTSSLESYGSFDKLQLVINLIGFTCLSSLPQYQRCIIESKGIKVIVLLLKRCLNNDIHIERQSFTPHLHTHERSWCCFDKEDWEGSNILLFYSLLALTEILHQCDLLQENPQQFSGEVTNITPQFVSKLQEICKSNSFSPGVRWYVSYILTYFGYYGFPTELAKRIGESLNKEEYSDMKLVLANGESLSVHVAILAVRCPSLVPPQLLPCRKSSKEIADEFVRETVREVRLSSHVGYETLVLLLEYVYLGCLRASEEAAKKLKVLAKRCNLQPLFQMLHRQHPKWGLPFPSFNLTSAFGLAGSCFSDIVLGAKSNELAGWTCDICSDTVPHMHVHKVILQSGCDYLQGLFRSGMQESHSQVIKVDISWQALIKLVQWFYSDELPGPPSGCLWDNMDDQEKLFNLQPYVELYWLAEFWILENIQEACFNVIMSCLDSSWRLSIRIIKMAYNLSLWKLVDIAANLMAPSYRQLRDSGELEEFDDALVHLIYSASIQLN 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2328g00005 905 ProSiteProfiles BTB domain profile. 715 796 IPR000210 GO:0005515
Vium2328g00005 905 Gene3D Potassium Channel Kv1.1; Chain A 710 883 IPR011333 -
Vium2328g00005 905 SUPERFAMILY POZ domain 565 687 IPR011333 -
Vium2328g00005 905 SUPERFAMILY POZ domain 740 840 IPR011333 -
Vium2328g00005 905 PANTHER OS06G0674800 PROTEIN 1 904 IPR044953 -
Vium2328g00005 905 Pfam BTB/POZ domain 732 803 IPR000210 GO:0005515
Vium2328g00005 905 CDD BTB_POZ_ZBTB_KLHL-like 742 792 - -
Vium2328g00005 905 ProSiteProfiles BTB domain profile. 585 665 IPR000210 GO:0005515
Vium2328g00005 905 SMART BTB_4 585 695 IPR000210 GO:0005515
Vium2328g00005 905 SMART BTB_4 731 843 IPR000210 GO:0005515
Vium2328g00005 905 SUPERFAMILY ARM repeat 7 585 IPR016024 -
Vium2328g00005 905 Gene3D Potassium Channel Kv1.1; Chain A 567 690 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2328g00005 Vium-Chr2328 12109 19010 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vium2328g00005 BTB 9.7e-07 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2328g00005 - - gmx:100786565 1494.18