Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2328g00003 ATGAAATCCGGCAGAGACAAAGAGAAAGAGAACGATCGCTGCATCAGTTCGCATATGCAGACCCTCCATCGCCGTCTTATCCACGCCCTAAACCTTGGCACCAGACATTTTGATGAGAAGACAAATAGGTGGAGATGGCAGTGCGCCAACATTGAAGTGCAGAAAAATGTACTACGATCAATTGGTGCCTTTCTTGATTCCTTATCGGGCGATGCACGTGCAGCACGTCATGCTGTTGTTAAGGAATCTGTTCCTGATATTTTAGGAGCATTATTATGGATTCTTCAATGCAAAAATGAGGCTTTATTAAGCATGGCATCAAATGTTGCAGTGAAGTTGGTTAGTGTTCTGCCTAATCCATTATTGCAATCACATATGTTGGATCTTGTTTATTGTCTATCATCCTTGCTATCTTCACATCAAGTAGAAGTTGCTATACCCTGTGCTACCACTTTGAATTTTGTAATCTCAAATTTGAGTGCTACAAATGAGAAGGAAGTTATGGAAGCACTGAAAGAAACAGAGGCTTCCCTTTGGATTGTTGGAAATATAAAGGATTTTGCTGAAGGTGTAAAGAAAATTGAGTATTTCGAAGAGATGAGTTTACTTTTGAGCACTATACTATGGCGCTGGCCACCGTCTAGGTTCTCTGTTTGTAATGATGTAATACTTATGAAAGGTCTAGCAAACATCCATACAAAGACAGATAGTTCTATTAAACTCGCACTTCTAAAGTTGTACACGTCAATAGCTTTGTGTGATTCTGCAGCAAGAAGACTTATAGAGGATGAAGAAATATTTCCACAAATGTTTGTGCAGGCAATGGGAAAATCAAACCCTCATGCTATTCGGATAGAGGGGTTTAGGCTTGCTCAGTGCCTATTGAGATCCCAAGATAATTGTTTAAAAGTGGTTGGTTTGTGTGGTGATGCTCTTGTTGAGGCCATCATTTGTGGAATGACAGAACCTAGGGTGACTTCTAAAAAGTTTGGAAACAACCACGGGTCTTTGTCAGTGGAAGCATGCCAGTTGGCTCTAATTACTCGCTGGGCAGGTGATCATCATACCAACTTTTGGAAACAAGGAATTGATAGAGTCCTTCTTAGTCTTCTGATTGAAAATATTGAAGACCAATTGTTTGAACCCGTCTTGGCTTTGGAAAAACAAATATATATGGCAAAAGAGGGATTAAAAGCCAATTATCATCTCGGTCTTAGGAGTTATCTGTGGGACATTCTTGGGTGGCTTACAATTCATTGGGGAGAAAATTTAAACCCTTATACTCGTGGTAGTGAGCTCTGCATCAAGTTACTAATTACATGTGCATGCTTGAGTTTTGTGGATACACTTGAAAAATGGTGCAGAATTTGTCAAAAGGATATTGATGATCATTTTCAAAGTGAACCTGTATCAAGGGCCGTTCTAATGATGATTCATTCTCCATGTAATTCCATCTCCTCACACACTAAATTCTTATTATCAGATGTACTGAAGGTGAAAGGCATGTCATGCTTGAAAAGCTTATTACATACTCTAGATTATACATCATCCCTAGAAAGCTATGGTTCATTTGATAAACTTCAACTGGTTATTAATTTAATTGGGTTTACTTGTCTTTCAAGTTTACCACAATACCAAAGATGTATCATTGAGAGCAAAGGGATAAAGGTGATTGTTCTTCTTCTGAAACGATGCTTAAATAATGACATTCATATCGAAAGGCAAAGCTTTACTCCTCATTTGCACACACATGAAAGGTCTTGGTGCTGTTTTGATAAAGAAGATTGGGAAGGCTCCAACATTCTCTTATTTTATAGTTTGTTGGCCTTAACAGAAATTCTTCATCAGTGTGACCTTTTACAAGAGAATCCTCAGCAATTTTCTGGAGAGGTGACAAACATTACACCACAGTTCGTTAGCAAACTTCAAGAGATCTGTAAAAGCAACTCTTTCAGTCCTGGTGTGAGATGGTATGTTTCTTATATTCTAACTTATTTTGGATATTATGGCTTCCCAACTGAATTAGCCAAAAGGATTGGAGAATCTCTCAATAAGGAAGAATACTCAGATATGAAGCTTGTCTTAGCAAATGGGGAATCTCTGAGTGTTCATGTTGCTATTCTTGCTGTTCGATGTCCATCACTAGTGCCTCCTCAATTGTTACCTTGTAGGAAGAGTTCTAAAGAGATAGCAGATGAGTTTGTCAGAGAGACCGTGAGAGAAGTTCGATTATCTTCTCATGTTGGTTATGAAACATTGGTGTTGTTGTTGGAATATGTATACTTGGGATGCTTACGTGCCAGTGAAGAAGCAGCAAAGAAGCTAAAAGTTCTTGCTAAGCGCTGCAATCTACAGCCTTTGTTCCAAATGCTTCACAGACAGCATCCGAAATGGGGCTTACCTTTCCCCAGCTTTAATCTTACGTCAGCTTTTGGTTTAGCTGGAAGTTGTTTTTCGGATATCGTATTGGGAGCTAAATCAAATGAGCTTGCTGGGTGGACATGCGATATTTGTTCTGACACAGTACCCCATATGCATGTTCACAAAGTTATATTGCAGTCTGGTTGTGATTATCTACAAGGTTTGTTCCGGTCAGGAATGCAAGAAAGTCATTCACAAGTAATAAAAGTTGATATTAGCTGGCAAGCATTGATTAAACTAGTGCAGTGGTTTTATTCTGATGAGCTGCCTGGTCCTCCATCTGGATGCTTGTGGGATAATATGGATGATCAAGAAAAGCTATTTAATCTACAACCATATGTGGAGCTTTATTGGCTTGCTGAGTTCTGGATTTTAGAAAATATTCAGGAAGCTTGCTTTAATGTTATTATGTCTTGTCTTGATTCTTCCTGGCGGTTGTCCATTAGAATAATCAAAATGGCTTATAATCTCTCTTTGTGGAAGTTAGTTGATATTGCTGCAAATCTCATGGCTCCTTCATATCGTCAATTACGAGATTCTGGTGAACTAGAAGAATTTGATGATGCACTAGTGCACTTGATTTATTCTGCTTCTATCCAACTTAACTAA 3030 0.3868 MKSGRDKEKENDRCISSHMQTLHRRLIHALNLGTRHFDEKTNRWRWQCANIEVQKNVLRSIGAFLDSLSGDARAARHAVVKESVPDILGALLWILQCKNEALLSMASNVAVKLVSVLPNPLLQSHMLDLVYCLSSLLSSHQVEVAIPCATTLNFVISNLSATNEKEVMEALKETEASLWIVGNIKDFAEGVKKIEYFEEMSLLLSTILWRWPPSRFSVCNDVILMKGLANIHTKTDSSIKLALLKLYTSIALCDSAARRLIEDEEIFPQMFVQAMGKSNPHAIRIEGFRLAQCLLRSQDNCLKVVGLCGDALVEAIICGMTEPRVTSKKFGNNHGSLSVEACQLALITRWAGDHHTNFWKQGIDRVLLSLLIENIEDQLFEPVLALEKQIYMAKEGLKANYHLGLRSYLWDILGWLTIHWGENLNPYTRGSELCIKLLITCACLSFVDTLEKWCRICQKDIDDHFQSEPVSRAVLMMIHSPCNSISSHTKFLLSDVLKVKGMSCLKSLLHTLDYTSSLESYGSFDKLQLVINLIGFTCLSSLPQYQRCIIESKGIKVIVLLLKRCLNNDIHIERQSFTPHLHTHERSWCCFDKEDWEGSNILLFYSLLALTEILHQCDLLQENPQQFSGEVTNITPQFVSKLQEICKSNSFSPGVRWYVSYILTYFGYYGFPTELAKRIGESLNKEEYSDMKLVLANGESLSVHVAILAVRCPSLVPPQLLPCRKSSKEIADEFVRETVREVRLSSHVGYETLVLLLEYVYLGCLRASEEAAKKLKVLAKRCNLQPLFQMLHRQHPKWGLPFPSFNLTSAFGLAGSCFSDIVLGAKSNELAGWTCDICSDTVPHMHVHKVILQSGCDYLQGLFRSGMQESHSQVIKVDISWQALIKLVQWFYSDELPGPPSGCLWDNMDDQEKLFNLQPYVELYWLAEFWILENIQEACFNVIMSCLDSSWRLSIRIIKMAYNLSLWKLVDIAANLMAPSYRQLRDSGELEEFDDALVHLIYSASIQLN 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2328g00003 1009 Gene3D Potassium Channel Kv1.1; Chain A 671 794 IPR011333 -
Vium2328g00003 1009 SUPERFAMILY ARM repeat 49 734 IPR016024 -
Vium2328g00003 1009 ProSiteProfiles BTB domain profile. 689 769 IPR000210 GO:0005515
Vium2328g00003 1009 SUPERFAMILY POZ domain 844 944 IPR011333 -
Vium2328g00003 1009 Pfam BTB/POZ domain 836 907 IPR000210 GO:0005515
Vium2328g00003 1009 SUPERFAMILY POZ domain 669 791 IPR011333 -
Vium2328g00003 1009 Gene3D Potassium Channel Kv1.1; Chain A 814 987 IPR011333 -
Vium2328g00003 1009 Gene3D - 25 344 IPR011989 -
Vium2328g00003 1009 SMART BTB_4 689 799 IPR000210 GO:0005515
Vium2328g00003 1009 SMART BTB_4 835 947 IPR000210 GO:0005515
Vium2328g00003 1009 CDD BTB_POZ_ZBTB_KLHL-like 846 896 - -
Vium2328g00003 1009 ProSiteProfiles BTB domain profile. 819 900 IPR000210 GO:0005515
Vium2328g00003 1009 PANTHER OS06G0674800 PROTEIN 5 1008 IPR044953 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2328g00003 Vium-Chr2328 12109 19323 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vium2328g00003 BTB 1.1e-06 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2328g00003 - - gmx:100786565 1687.55