Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2328g00002 ATGAAATCCGGCAGAGACAAAGAGAAAGAGAACGATCGCTGCATCAGTTCGCATATGCAGACCCTCCATCGCCGTCTTATCCACGCCCTAAACCTTGGCACCAGACATTTTGATGAGAAGACAAATAGGTGGAGATGGCAGTGCGCCAACATTGAAGTGCAGAAAAATGTACTACGATCAATTGGTGCCTTTCTTGATTCCTTATCGGGCGATGCACGTGCAGCACGTCATGCTGTTGTTAAGGAATCTGTTCCTGATATTTTAGGAGCATTATTATGGATTCTTCAATGCAAAAATGAGGCTTTATTAAGCATGGCATCAAATGTTGCAGTGAAGTTGGTTAGTGTTCTGCCTAATCCATTATTGCAATCACATATGTTGGATCTTGTTTATTGTCTATCATCCTTGCTATCTTCACATCAAGTAGAAGTTGCTATACCCTGTGCTACCACTTTGAATTTTGTAATCTCAAATTTGAGTGCTACAAATGAGAAGGAAGTTATGGAAGCACTGAAAGAAACAGAGGCTTCCCTTTGGATTGTTGGAAATATAAAGGATTTTGCTGAAGGTGTAAAGAAAATTGAGTATTTCGAAGAGATGAGTTTACTTTTGAGCACTATACTATGGCGCTGGCCACCGTCTAGGTTCTCTGTTTGTAATGATGTAATACTTATGAAAGGTCTAGCAAACATCCATACAAAGACAGATAGTTCTATTAAACTCGCACTTCTAAAGTTGTACACGTCAATAGCTTTGTGTGATTCTGCAGCAAGAAGACTTATAGAGGATGAAGAAATATTTCCACAAATGTTTGTGCAGGCAATGGGAAAATCAAACCCTCATGCTATTCGGATAGAGGGGTTTAGGCTTGCTCAGTGCCTATTGAGATCCCAAGATAATTGTTTAAAAGTGGTTGGTTTGTGTGGTGATGCTCTTGTTGAGGCCATCATTTGTGGAATGACAGAACCTAGGGTGACTTCTAAAAAGTTTGGAAACAACCACGGGTCTTTGTCAGTGGAAGCATGCCAGTTGGCTCTAATTACTCGCTGGGCAGGTGATCATCATACCAACTTTTGGAAACAAGGAATTGATAGAGTCCTTCTTAGTCTTCTGATTGAAAATATTGAAGACCAATTGTTTGAACCCGTCTTGGCTTTGGAAAAACAAATATATATGGCAAAAGAGGGATTAAAAGCCAATTATCATCTCGGTCTTAGGAGTTATCTGTGGGACATTCTTGGGTGGCTTACAATTCATTGGGGAGAAAATTTAAACCCTTATACTCGTGGTAGTGAGCTCTGCATCAAGTTACTAATTACATGTGCATGCTTGAGTTTTGTGGATACACTTGAAAAATGGTGCAGAATTTGTCAAAAGGATATTGATGATCATTTTCAAAGTGAACCTGTATCAAGGGCCGTTCTAATGATGATTCATTCTCCATGTAATTCCATCTCCTCACACACTAAATTCTTATTATCAGATGTACTGAAGGTGAAAGGCATGTCATGCTTGAAAAGCTTATTACATACTCTAGATTATACATCATCCCTAGAAAGCTATGGTTCATTTGATAAACTTCAACTGGTTATTAATTTAATTGGGTTTACTTGTCTTTCAAGTTTACCACAATACCAAAGATGTATCATTGAGAGCAAAGGGATAAAGGTGATTGTTCTTCTTCTGAAACGATGCTTAAATAATGACATTCATATCGAAAGGCAAAGCTTTACTCCTCATTTGCACACACATGAAAGGTCTTGGTGCTGTTTTGATAAAGAAGATTGGGAAGGCTCCAACATTCTCTTATTTTATAGTTTGTTGGCCTTAACAGAAATTCTTCATCAGTGTGACCTTTTACAAGAGAATCCTCAGCAATTTTCTGGAGAGGTGACAAACATTACACCACAGTTCGTTAGCAAACTTCAAGAGATCTGTAAAAGCAACTCTTTCAGTCCTGGTGTGAGATGGAAGAGTTCTAAAGAGATAGCAGATGAGTTTGTCAGAGAGACCGTGAGAGAAGTTCGATTATCTTCTCATGTTGGTTATGAAACATTGGTGTTGTTGTTGGAATATGTATACTTGGGATGCTTACGTGCCAGTGAAGAAGCAGCAAAGAAGCTAAAAGTTCTTGCTAAGCGCTGCAATCTACAGCCTTTGTTCCAAATGCTTCACAGACAGCATCCGAAATGGGGCTTACCTTTCCCCAGCTTTAATCTTACGTCAGCTTTTGGTTTAGCTGGAAGTTGTTTTTCGGATATCGTATTGGGAGCTAAATCAAATGAGCTTGCTGGGTGGACATGCGATATTTGTTCTGACACAGTACCCCATATGCATGTTCACAAAGTTATATTGCAGTCTGGTTGTGATTATCTACAAGGTTTGTTCCGGTCAGGAATGCAAGAAAGTCATTCACAAGTAATAAAAGTTGATATTAGCTGGCAAGCATTGATTAAACTAGTGCAGTGGTTTTATTCTGATGAGCTGCCTGGTCCTCCATCTGGATGCTTGTGGGATAATATGGATGATCAAGAAAAGCTATTTAATCTACAACCATATGTGGAGCTTTATTGGCTTGCTGAGTTCTGGATTTTAGAAAATATTCAGGAAGCTTGCTTTAATGTTATTATGTCTTGTCTTGATTCTTCCTGGCGGTTGTCCATTAGAATAATCAAAATGGCTTATAATCTCTCTTTGTGGAAGTTAGTTGATATTGCTGCAAATCTCATGGCTCCTTCATATCGTCAATTACGAGATTCTGGTGAACTAGAAGAATTTGATGATGCACTAGTGCACTTGATTTATTCTGCTTCTATCCAACTTAACTAA 2829 0.3878 MKSGRDKEKENDRCISSHMQTLHRRLIHALNLGTRHFDEKTNRWRWQCANIEVQKNVLRSIGAFLDSLSGDARAARHAVVKESVPDILGALLWILQCKNEALLSMASNVAVKLVSVLPNPLLQSHMLDLVYCLSSLLSSHQVEVAIPCATTLNFVISNLSATNEKEVMEALKETEASLWIVGNIKDFAEGVKKIEYFEEMSLLLSTILWRWPPSRFSVCNDVILMKGLANIHTKTDSSIKLALLKLYTSIALCDSAARRLIEDEEIFPQMFVQAMGKSNPHAIRIEGFRLAQCLLRSQDNCLKVVGLCGDALVEAIICGMTEPRVTSKKFGNNHGSLSVEACQLALITRWAGDHHTNFWKQGIDRVLLSLLIENIEDQLFEPVLALEKQIYMAKEGLKANYHLGLRSYLWDILGWLTIHWGENLNPYTRGSELCIKLLITCACLSFVDTLEKWCRICQKDIDDHFQSEPVSRAVLMMIHSPCNSISSHTKFLLSDVLKVKGMSCLKSLLHTLDYTSSLESYGSFDKLQLVINLIGFTCLSSLPQYQRCIIESKGIKVIVLLLKRCLNNDIHIERQSFTPHLHTHERSWCCFDKEDWEGSNILLFYSLLALTEILHQCDLLQENPQQFSGEVTNITPQFVSKLQEICKSNSFSPGVRWKSSKEIADEFVRETVREVRLSSHVGYETLVLLLEYVYLGCLRASEEAAKKLKVLAKRCNLQPLFQMLHRQHPKWGLPFPSFNLTSAFGLAGSCFSDIVLGAKSNELAGWTCDICSDTVPHMHVHKVILQSGCDYLQGLFRSGMQESHSQVIKVDISWQALIKLVQWFYSDELPGPPSGCLWDNMDDQEKLFNLQPYVELYWLAEFWILENIQEACFNVIMSCLDSSWRLSIRIIKMAYNLSLWKLVDIAANLMAPSYRQLRDSGELEEFDDALVHLIYSASIQLN 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2328g00002 942 Pfam BTB/POZ domain 769 840 IPR000210 GO:0005515
Vium2328g00002 942 SUPERFAMILY ARM repeat 48 648 IPR016024 -
Vium2328g00002 942 PANTHER OS06G0674800 PROTEIN 5 657 IPR044953 -
Vium2328g00002 942 SMART BTB_4 768 880 IPR000210 GO:0005515
Vium2328g00002 942 Gene3D Potassium Channel Kv1.1; Chain A 747 920 IPR011333 -
Vium2328g00002 942 CDD BTB_POZ_ZBTB_KLHL-like 779 829 - -
Vium2328g00002 942 Gene3D - 22 371 IPR011989 -
Vium2328g00002 942 Gene3D Potassium Channel Kv1.1; Chain A 643 728 IPR011333 -
Vium2328g00002 942 ProSiteProfiles BTB domain profile. 752 833 IPR000210 GO:0005515
Vium2328g00002 942 SUPERFAMILY POZ domain 777 877 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2328g00002 Vium-Chr2328 12109 19323 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vium2328g00002 BTB 1e-06 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2328g00002 - - mtr:25487018 1360.9