Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2325g00001 ATGACTCAGTGCAGTGACCCTAACATCATAGTGGAGGGACGAAAGGATAGCTTAATTAGAACTTGTCCTACATGTGGTCATCATATCAAATGCCAAGAACAGGGAGGTGGAATTCATGACTTACCAGGACTTCCTGCTGGTGTGAAGTTTGATCCTACAGATCAAGAGATTCTTGAACATTTGGAAGCGAAGGTGCGATCTGATATTCATAAGCTTCATCCTCTCATTGATGAGTTTATTCCCACTCTTGAAGGCGAGAATGGAATCTGCTATACTCACCCAGAGAAATTGCCAGGAGTTAGCAAAGATGGTCTGATCCGGCATTTCTTTCACAGGCCTTCAAAGGCATACACCACAGGAACAAGGAAGAGGAGAAAGGTGCATTCAGATGAAGATGGCAGTGAGACACGTTGGCACAAAACAGGTAAAACAAGACCAGTCTACAACAGTGCCAAGTTGAAAGGGTACAAGAAAATCCTTGTACTTTACACAAACTATGGAAAACAAAGAAAGCCAGAGAAGACAAACTGGGTGATGCACCAATACCACCTTGGAAGTGATGAAGAGGAAAAAGAAGGGGAGTTAGTGGTGTCTAAAGTTTTCTACCAAACACAGCCTAGACAGTGCAGTTCCCTCATGAAAGACTCATCAGTTCCTGAGAAAAACATTAAGGGTCAAAGTGTGCATGAGGTGATCAATAGCAGAAACAAAAGCAACGGCTTTGTTGAGTATTACCATTCAAATTTCATCTCATTTGATCAAAGTGCTCAACACAGACCAGCCACTGCTCAAGTAATTTCCCATTTTCCTGTTCATGAAGGTGCTTCTTTCAACATTCCTTGA 843 0.4235 MTQCSDPNIIVEGRKDSLIRTCPTCGHHIKCQEQGGGIHDLPGLPAGVKFDPTDQEILEHLEAKVRSDIHKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGLIRHFFHRPSKAYTTGTRKRRKVHSDEDGSETRWHKTGKTRPVYNSAKLKGYKKILVLYTNYGKQRKPEKTNWVMHQYHLGSDEEEKEGELVVSKVFYQTQPRQCSSLMKDSSVPEKNIKGQSVHEVINSRNKSNGFVEYYHSNFISFDQSAQHRPATAQVISHFPVHEGASFNIP 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2325g00001 280 ProSiteProfiles NAC domain profile. 44 203 IPR003441 GO:0003677|GO:0006355
Vium2325g00001 280 MobiDBLite consensus disorder prediction 118 143 - -
Vium2325g00001 280 Gene3D NAC domain 53 207 IPR036093 GO:0003677|GO:0006355
Vium2325g00001 280 Pfam No apical meristem (NAM) protein 45 184 IPR003441 GO:0003677|GO:0006355
Vium2325g00001 280 SUPERFAMILY NAC domain 39 203 IPR036093 GO:0003677|GO:0006355
Vium2325g00001 280 MobiDBLite consensus disorder prediction 123 142 - -
Vium2325g00001 280 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 18 228 IPR044799 GO:0003700
Vium2325g00001 280 FunFam NAC domain-containing protein 73 53 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2325g00001 Vium-Chr2325 33438 36104 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2325g00001 20 218 NAC Transcription Factor Family AT4G28500 79.000 4.64e-117 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium2325g00001 NAM 1.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2325g00001 - - gmx:100797459 540.036